| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,316,818 – 5,316,918 |
| Length | 100 |
| Max. P | 0.605812 |
| Location | 5,316,818 – 5,316,918 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 80.43 |
| Mean single sequence MFE | -19.22 |
| Consensus MFE | -13.02 |
| Energy contribution | -14.08 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.605812 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5316818 100 + 27905053 CCAGCGUCUGCUGGCAACCUCCGCCAGCAACAUCAAUGUUUUGCUUGUUGUCGUUUGCUCUUCCAUUUCGAGCAAUCCCCAAAGACACCCGACCACCCCG .....((((((((((.......))))))...................(((..(.((((((.........)))))).)..))))))).............. ( -24.30) >DroSec_CAF1 21089 100 + 1 CCAGCGUCUGCUGGCAACCUCCGCCAGUAACAUCAAUGUUUUGCUUGUUGUCGUUUGCUCUUCCAUUUCGAGCAAUCCCCAAAGACACCCGACCACCCGC ...(((..(((((((.......))))))).................((.((((.((((((.........))))))((......))....)))).)).))) ( -22.40) >DroEre_CAF1 23633 96 + 1 CCAGCGUCUGCUGGCAACCUUCGCCAGUAAGAUCAAUGUUUUGCUUGUUGUCGUUUGCUCUUCCAUUCCGAGCAAUCCCCAAAGACACCCCCCCCC---- .....((((((((((.......))))))...................(((..(.((((((.........)))))).)..)))))))..........---- ( -22.10) >DroWil_CAF1 24694 85 + 1 CAACCGUCUGCUGGCAACCUUCUCCAGUAACAUCAAUGUUUUGCUUCUUGUCGUUUGCUCUGCCAUCUU--------CU-------UCUCUACCACCCAU .........((.(((((.(..(...(((((((....)))..))))....)..).)))))..))......--------..-------.............. ( -7.20) >DroYak_CAF1 21740 100 + 1 CCAGCGUCUGCUGGCAACCUCCGCCAGUAACAUCAAUGUUUUGCUUGUUGUCGUUUGCUCUUCCAUUCCGAGCAAUCCCCAAAGACACACCACCUCCCCC ...(.((((((((((.......))))))...................(((..(.((((((.........)))))).)..))))))).)............ ( -22.40) >DroAna_CAF1 22187 92 + 1 CCAGCGUCGGCUGGCAACCUCCUUCAGUAACAUCAAUGUUUUGCUUGUUGUCGCUUGCUUUUCCAUUCCAAGCAGUCCCGU-----CCCCAACUAA---C ..((((.((((.(((((...........((((....))))))))).)))).))))(((((.........))))).......-----..........---. ( -16.90) >consensus CCAGCGUCUGCUGGCAACCUCCGCCAGUAACAUCAAUGUUUUGCUUGUUGUCGUUUGCUCUUCCAUUCCGAGCAAUCCCCAAAGACACCCCACCACCC_C ..((((.(.((((((.......))))))((((.(((....)))..))))).))))(((((.........))))).......................... (-13.02 = -14.08 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:04 2006