| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,308,193 – 5,308,286 |
| Length | 93 |
| Max. P | 0.604982 |
| Location | 5,308,193 – 5,308,286 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 86.99 |
| Mean single sequence MFE | -24.81 |
| Consensus MFE | -17.66 |
| Energy contribution | -17.53 |
| Covariance contribution | -0.13 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.604982 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5308193 93 - 27905053 GAUUAAUCGCCAGCAUUAGUCAGUUUUUGGUGCCUUUGGAUGUAUCUGUACAUGUAUUUGUAUCCGUAUC-UGUGUGGGCAUCCCAUUGUUGGC ........(((((((.....(((....((((((...((.(((((....))))).))...))).)))...)-)).(((((...)))))))))))) ( -24.80) >DroSec_CAF1 12803 93 - 1 GAUUAAUCGCCAGCAUUAGUCAGUUUUUGGUGCCUUUGGAUGUAUCUGUACAUGUUUGUGUAUCCGUAUC-UGUAUGGGCAUCCCAUUGUUGGC ........(((((((((((.......)))))))....((((((....((((((....))))))(((((..-..)))))))))))......)))) ( -25.50) >DroSim_CAF1 13457 93 - 1 GAUUAAUCGCCAGCAUUAGUCAGUUUUUGGUGCCUUUGGAUGUAUCUGUACAUGUAUCUGUAGCCGCAUC-UGUAUGGGCAUCCCAUUGUUGGC ........(((((((.............(((((((.(((((((.....((((......))))...)))))-))...)))))))....))))))) ( -25.03) >DroEre_CAF1 12825 87 - 1 GAUUAAUCGCCAGCAUUAGUCAGCUUUUGGUGCCUUCGGAUGUAG--AUAUCUGUAUCCAUAUCUGUAUCU-----GUGUAUCCCAUUGUUGGC ........(((((((..((....))...(((((...(((((((((--((((........))))))))))))-----).)))))....))))))) ( -23.90) >consensus GAUUAAUCGCCAGCAUUAGUCAGUUUUUGGUGCCUUUGGAUGUAUCUGUACAUGUAUCUGUAUCCGUAUC_UGUAUGGGCAUCCCAUUGUUGGC ........(((((((.............(((((((...((((.....(((((......)))))...))))......)))))))....))))))) (-17.66 = -17.53 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:02 2006