Locus 1847

Sequence ID 3R_DroMel_CAF1
Location 5,300,295 – 5,300,385
Length 90
Max. P 0.618337
window3040

overview

Window 0

Location 5,300,295 – 5,300,385
Length 90
Sequences 5
Columns 94
Reading direction reverse
Mean pairwise identity 86.11
Mean single sequence MFE -20.26
Consensus MFE -15.30
Energy contribution -14.70
Covariance contribution -0.60
Combinations/Pair 1.29
Mean z-score -1.64
Structure conservation index 0.76
SVM decision value 0.17
SVM RNA-class probability 0.618337
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5300295 90 - 27905053
AAAUAUAUUUAC----AUACAUAUAUAGUGUAUAUAUCCGUGGCCUAAUCGCCAAUUUAUCGCCGCUCAUUCUGAGCCAUGCCAACAUGUCGCG
............----((((((.....)))))).......((((......))))......(((.((((.....))))((((....))))..))) ( -17.60)
>DroSec_CAF1 4859 86 - 1
AAGUAUAU--------AUACAUAUAUAGUGUAUAUAUCCGUGGCCUAAUCGCCAAUUUAUCGCCGCUCAUUCUGAGCCAUGCCAACAUGUCGCG
..(.((((--------((((((.....)))))))))).).((((......))))......(((.((((.....))))((((....))))..))) ( -22.70)
>DroSim_CAF1 4474 86 - 1
AAGUAUAU--------AUACAUAUAUAGUGUAUAUAUCCGUGGCCUAAUCGCCAAUUUAUCGCCGCUCAUUCUGAGCCAUGCCAACAUGUCGCG
..(.((((--------((((((.....)))))))))).).((((......))))......(((.((((.....))))((((....))))..))) ( -22.70)
>DroEre_CAF1 4696 92 - 1
UACUAUGU--ACUACAGUGCGAGUACAGUGUAUAUAUCCGUGGCCUAAUCGCCAAUUUAUCGCCGCUCAUUCUGAGCCAUACCAACAUGUCGUG
((((.(((--((....)))))))))..((((.........((((......))))..........((((.....)))).......))))...... ( -18.40)
>DroYak_CAF1 4543 89 - 1
UUGUAUAU--GGUAUAGUGUAUAUA---UGUACAUAUCCGUGGCCUAAUCGCCAAUUUAUCGCCGCUCAUUCUGAGCCAUGCCAACAUGUCGUG
.......(--(((((.((((((...---.)))))).....((((......))))..........((((.....)))).)))))).......... ( -19.90)
>consensus
AAGUAUAU________AUACAUAUAUAGUGUAUAUAUCCGUGGCCUAAUCGCCAAUUUAUCGCCGCUCAUUCUGAGCCAUGCCAACAUGUCGCG
................((((((.....)))))).......((((......))))......(((.((((.....))))((((....))))..))) (-15.30 = -14.70 +  -0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:01 2006