| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,284,432 – 5,284,542 |
| Length | 110 |
| Max. P | 0.972828 |
| Location | 5,284,432 – 5,284,542 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 75.93 |
| Mean single sequence MFE | -29.17 |
| Consensus MFE | -21.02 |
| Energy contribution | -21.13 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.72 |
| SVM decision value | 1.70 |
| SVM RNA-class probability | 0.972828 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5284432 110 - 27905053 -AAAAUGUCUACUAAUCUC---UGUCCCAAU------GCUUCCUCCUCCGACAUACAGCCAAUACUCUACUCGUAUUGGCGCAGCUCGUGCUCCUGGCGCGUGCGCAUUGCGAUGAACCU -..................---.(((.((((------((..................((((((((.......))))))))...((.(((((.....))))).)))))))).)))...... ( -33.40) >DroVir_CAF1 2867 98 - 1 -AAAAUGUCAACUAACUC------------U------GCUU---CUAUCGGUACACAGCCAAUACUCUACUCGUAUUGGCGUAGCUCGUGCUCCUGGCGUGUUCGGAUUGCGAUGAAUCU -..............(..------------(------((..---..(((.(.((((.((((((((.......))))))))(.(((....))).)....)))).).))).)))..)..... ( -24.50) >DroGri_CAF1 4583 101 - 1 -AAAAUGUCGACUAACGC---------AAAU------GUUU---CCAUCGAUACACAGCCAAUACUCUAUUCGUAUUGGCGCAGCUCGUGCUCCUGGCGCGUUCGAAUUGCGAUGAAUCU -....((((((..((((.---------...)------))).---...))))))....((((((((.......))))))))((((..(((((.....)))))......))))......... ( -26.60) >DroWil_CAF1 4242 113 - 1 -AAAAUGUCUUCUAAUGCAAACAUUCCCUCU------AAUUAUGUUUCUGAUGUACAGCCGAUACUUUAUUCGUAUUGGCGCAGCUCGUGCUCUUGGCGCGUGCGCAUUGCCAUGAACCU -..(((((.......(((((((((.......------....))))))..........((((((((.......)))))))))))((.(((((.....))))).)))))))........... ( -30.10) >DroMoj_CAF1 2377 98 - 1 -AAAAUGUCGACUAAUCA------------A------GAUU---CUAAUGAUUCCCAGCCGAUACUCUACUCGUAUUGGCGCAGUUCGUGCUCCUGGCGAGUGCGCAUUGCGAUGAACCU -.....(((.........------------.------((.(---(....)).))...((((((((.......))))))))(((((.((..(((.....)))..)).))))))))...... ( -29.10) >DroAna_CAF1 2440 117 - 1 CAAAAUGUCUACUAAUCCA---AAUUCCUCUGUUUCCGAUUCCUCCCCCGAUGCCCAGCCAAUACUCUACUCGUAUUGGCGCAGCUCGUGCUCCUGGCGCGUGCGCAUUGCGAUGAACCU ...................---...............(.(((.((...((((((...((((((((.......))))))))...((.(((((.....))))).)))))))).)).))).). ( -31.30) >consensus _AAAAUGUCUACUAAUCC_________C__U______GAUU___CCACCGAUACACAGCCAAUACUCUACUCGUAUUGGCGCAGCUCGUGCUCCUGGCGCGUGCGCAUUGCGAUGAACCU ......(((................................................((((((((.......))))))))(((((.(((((.....))))).))....))))))...... (-21.02 = -21.13 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:55 2006