| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 844,475 – 844,590 |
| Length | 115 |
| Max. P | 0.939688 |
| Location | 844,475 – 844,590 |
|---|---|
| Length | 115 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 88.10 |
| Mean single sequence MFE | -35.30 |
| Consensus MFE | -33.23 |
| Energy contribution | -33.04 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.94 |
| SVM decision value | 1.28 |
| SVM RNA-class probability | 0.939688 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 844475 115 + 27905053 CGCGGCCCCCGAGUUGCAAGGAAGUUGUCCCAAGAACUUCCCAGGCGCUGUGUG-----AGAGAGAGAAACAUGCGCCAGCGACUGUCAUGCAAAUUAGCAAGAAAAAUUGCAUGCCAAA ...(((.....((((((..(((((((........)))))))..(((((.((((.-----..........))))))))).))))))...((((((.((........)).)))))))))... ( -37.80) >DroSec_CAF1 20234 120 + 1 CGCGGCCGCCGAGUUGCAAGGAAGUUGUCCCCAGAACUUCCCAGGCGCUGUGGGAGCGGAGAGAGAGAAAUAUGCGCCAGCGACUGUCAUGCAAAUUAGCAAGAAAAAUUGCAUGCCAAA ...(((.((..((((((..(((((((........)))))))..((((((((.....(.....)......))).))))).)))))).((.(((......))).))......))..)))... ( -35.80) >DroSim_CAF1 19472 109 + 1 -----------AGUUGCAAGGAAGUUGUCCCCAGAACUUCCCAGGCGCUGUGGGAGCGGAGAGAGAGAAAUAUGCGCCAGCGACUGUCAUGCAAAUUAGCAAGAAAAAUUGCAUGCCAAA -----------((((((..(((((((........)))))))..((((((((.....(.....)......))).))))).))))))(.(((((((.((........)).))))))).)... ( -33.00) >DroEre_CAF1 21366 110 + 1 AUC-GCAGCCGAGUUGCAAGGAAGUUGUCCCCAGAACUUCCCAGGCGCUGUG---------AGAGAAAAAUAUGCGCCAGCGACUGUCAUGCAAAUUAGCAAGAAAAAUUGCAUGCCAAA ...-(((....((((((..(((((((........)))))))..((((((((.---------........))).))))).))))))....)))......((((......))))........ ( -34.60) >consensus CGC_GCCGCCGAGUUGCAAGGAAGUUGUCCCCAGAACUUCCCAGGCGCUGUGGG_____AGAGAGAGAAAUAUGCGCCAGCGACUGUCAUGCAAAUUAGCAAGAAAAAUUGCAUGCCAAA ...........((((((..(((((((........)))))))..((((((((..................))).))))).))))))(.(((((((.((........)).))))))).)... (-33.23 = -33.04 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:32 2006