Locus 1837

Sequence ID 3R_DroMel_CAF1
Location 5,252,328 – 5,252,422
Length 94
Max. P 0.991547
window3019

overview

Window 9

Location 5,252,328 – 5,252,422
Length 94
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 66.20
Mean single sequence MFE -37.08
Consensus MFE -17.02
Energy contribution -18.05
Covariance contribution 1.03
Combinations/Pair 1.23
Mean z-score -2.43
Structure conservation index 0.46
SVM decision value 2.27
SVM RNA-class probability 0.991547
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5252328 94 - 27905053
AUUCCGGAAUCCG-------GAACCCAGAGUCACUGGAGUCACUGGGCAUUUUU-GUUACGCCCCCGCUCUCAACCGUAGGGAUAAGUAGGGGGUGUGGCAC
.((((((...)))-------)))(((((.(.(......).).)))))......(-(((((((((((...((...((....))...))..)))))))))))). ( -38.80)
>DroSec_CAF1 26102 80 - 1
AUUCCGGAUUC---------------------ACUGGAGUCACUGGGCAUUUUU-GUAACGCCCCCGCUCUCAACAGUGAGGAUAAGUAGGGGGCGUGGCAC
..(((((....---------------------.)))))(((((...(((....)-))...(((((((((((((....))))....))).))))))))))).. ( -31.00)
>DroSim_CAF1 26206 85 - 1
AUUCCGGAAUCCG-------UAC---------UCCGGAGUCACUGGGCAUUUUU-GUAACGCCCCCGCUCUCAACAGUGAGGAUAAGUAGGGGGCGUGGCAC
..((((((.....-------...---------))))))(((((...(((....)-))...(((((((((((((....))))....))).))))))))))).. ( -35.00)
>DroEre_CAF1 28620 100 - 1
AUUCCGGACUCGGGGCUCGGGACUCCGGACUCACUGGAGUCACUGGGCUU-UUU-GUUACGCCCCCGCUCUCAGCGGAAAGCGUAGGCAGGGGGCGUGGCAC
...(((....)))(((((((((((((((.....)))))))).))))))).-..(-((((((((((((((..(.((.....)))..))).)))))))))))). ( -55.70)
>DroYak_CAF1 26360 92 - 1
AUACCGGACUCCGGUCUCCGGACUCCGG---------AGUCACUGGGCUUUUUU-GUUACGCCCAGGCUCUCAACGGUAAGGAUAAGUAGGGGGCGUGGCAC
...(((((.(((((...))))).)))))---------.((((((((((......-.....))))).((((((.((...........)).))))))))))).. ( -40.40)
>DroPer_CAF1 26659 76 - 1
GAACCGGAG-------------A---------GCCGGAGUCAGUGGGUUUUAUCCGUAA-AC-GAGGC-AUCGAGGG-AGGGGGCCGUGGGGCGCUGGGAAU
...((((..-------------.---------.))))..(((((((((((..(((.(..-.(-((...-.)))).))-)..)))))......)))))).... ( -21.60)
>consensus
AUUCCGGAAUCCG_______GAC_________ACUGGAGUCACUGGGCAUUUUU_GUAACGCCCCCGCUCUCAACGGUAAGGAUAAGUAGGGGGCGUGGCAC
..(((((..........................)))))(((((.((((............))))..((((((.((...........)).))))))))))).. (-17.02 = -18.05 +   1.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:41 2006