Locus 1826

Sequence ID	3R_DroMel_CAF1
Location	5,222,721 – 5,222,834
Length	113
Max. P	0.986361

overview

Window 4

Location	5,222,721 – 5,222,834
Length	113
Sequences	4
Columns	114
Reading direction	forward
Mean pairwise identity	73.20
Mean single sequence MFE	-29.79
Consensus MFE	-17.54
Energy contribution	-19.60
Covariance contribution	2.06
Combinations/Pair	1.21
Mean z-score	-2.22
Structure conservation index	0.59
SVM decision value	2.04
SVM RNA-class probability	0.986361
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5222721 113 + 27905053
-AAAUGUAUCUGGUAUCUUUCAGAUGCAUUAAGUAUCUGAGGAUGCUUUGUCCAUUGAAUCUCUAUGAGGAUCAGCAUCCGUUGGCUAUGUAAAGUACCCUAUGAAGUGUUAUC
-.((..(.((.(((((...((((((((.....))))))))(((((((..((((...............)))).)))))))..............)))))....)).)..))... ( -29.36)
>DroSim_CAF1 11443 102 + 1
-AAAAGUAUCUGGUAUCUAACAGAUGCACCAAGUAUCUGAGGAUGCUUUU-CCA----------AUGCGGCUCAGCAUCCGUUGGCUAUGUAAGUUACUUUAUGAAGUGUUAUA
-.((((((.((.(((.(((((((((((.....))))))..(((((((...-((.----------....))...)))))))))))).)))...)).))))))............. ( -29.50)
>DroEre_CAF1 12244 112 + 1
UAUGAGUAUCUUGUAUCUAACAGAUACACU-CGUAUCUGGGGAUGCUUUU-UCCAUAAAUCUCUAUGAGGAUCAGCAUCAGUUGGUCAUGUACGAUACUUUAUGAAAUGCCCUG
...(((((((..((((((..(((((((...-.))))))).))))))....-..((((......))))..(((((((....)))))))......))))))).............. ( -30.70)
>DroYak_CAF1 6465 110 + 1
UUGUAGUAUC-UGUAUCCAACAGAUACACU-UGUAUCUUGGGCUGCUU-U-UCAAUGAAUCUCUAUGGGGAUCAGCAUCAGUUGCUUAUGCAAGGUAGUUUUUGAAAUGUUCUG
.....(((((-(((.....))))))))...-....((..(((((((((-(-.((.(((.((((....)))))))(((.....)))...)).))))))))))..))......... ( -29.60)
>consensus
_AAAAGUAUCUGGUAUCUAACAGAUACACU_AGUAUCUGAGGAUGCUUUU_CCAAUGAAUCUCUAUGAGGAUCAGCAUCAGUUGGCUAUGUAAGGUACUUUAUGAAAUGUUAUG
..((((((((..((((((..(((((((.....))))))).)))))).......................(((((((....)))))))......))))))))............. (-17.54 = -19.60 +   2.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:27 2006