| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,215,303 – 5,215,417 |
| Length | 114 |
| Max. P | 0.698114 |
| Location | 5,215,303 – 5,215,417 |
|---|---|
| Length | 114 |
| Sequences | 3 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 87.93 |
| Mean single sequence MFE | -27.67 |
| Consensus MFE | -18.55 |
| Energy contribution | -20.00 |
| Covariance contribution | 1.45 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.80 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.698114 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5215303 114 + 27905053 AUCUUCGUCCAUUUUGUACUUUUCAAUGCAUAAAAGUUGCGUUUUGUUGAGUUGAUUUUUCGCGAU---GCUCAAUAAACAAGUACAAACAAUAGACAUUGUUAAAUGAUAUGAAGA .(((((((.((((((((((((...((((((.......))))))((((((((((((....)))....---)))))))))..)))))))((((((....)))))))))))..))))))) ( -29.40) >DroSec_CAF1 21156 114 + 1 AUCUUCGUCCAUUUCGUACUUUUCAAUGCAUAAAAGUUGCGUUUUGUUGAGUUCUUUUUUCGCGAU---GCUCAAUAAACAAGUACAAACAAUAGACAUUGUUAAAUGAUAUGAAGA .(((((((.(((((.((((((...((((((.......))))))(((((((((((.........)).---)))))))))..)))))).((((((....)))))))))))..))))))) ( -28.30) >DroYak_CAF1 22384 116 + 1 AUCUUAUCAUUUUUAGUACUUUUCAAUGCAUAAAAGUAGUGUUUU-UUGAGCAGCUUUUUCGCAAUGUUGCCCAAUAAAGAAGUACAAACAAUAGACAUUGUUAAAUGAUAUGAAGA .((.((((((((...(((((((((((.((((.......))))...-))))(((((...........)))))........))))))).((((((....)))))))))))))).))... ( -25.30) >consensus AUCUUCGUCCAUUUAGUACUUUUCAAUGCAUAAAAGUUGCGUUUUGUUGAGUUGAUUUUUCGCGAU___GCUCAAUAAACAAGUACAAACAAUAGACAUUGUUAAAUGAUAUGAAGA .(((((((.(((((.((((((...((((((.......))))))(((((((((....((.....))....)))))))))..)))))).((((((....)))))))))))..))))))) (-18.55 = -20.00 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:22 2006