Locus 182

Sequence ID 3R_DroMel_CAF1
Location 842,939 – 843,038
Length 99
Max. P 0.996139
window302

overview

Window 2

Location 842,939 – 843,038
Length 99
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 89.50
Mean single sequence MFE -26.15
Consensus MFE -24.10
Energy contribution -24.35
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -2.79
Structure conservation index 0.92
SVM decision value 2.66
SVM RNA-class probability 0.996139
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 842939 99 + 27905053
UCUGCUUUAAAUUGAAUUGGCCUUUGUGCGGACACUCGUGCACUCGUGUAUGGCAUACAUGUGCCCAUUCCCA---------------------UUCGUCCACACAAUAAAAUCCAAACA
................((((...(((((.((((....(((((....)))))(((((....)))))........---------------------...)))).)))))......))))... ( -25.30)
>DroSec_CAF1 18708 99 + 1
UCUGCUUUAAAUUGAAUUGGCCUUUGUGCGGACACUCGUGCACUCGUGUAUGGCAUACAUGUGCCCAUUCCCA---------------------UUCGUCCACACAAUAAAAUCCAAACA
................((((...(((((.((((....(((((....)))))(((((....)))))........---------------------...)))).)))))......))))... ( -25.30)
>DroSim_CAF1 17918 99 + 1
UCUGCUUUAAAUUGAAUUGGCCUUUGUGCGGACACUCGUGCACUCGUGUAUGGCAUACAUGUGCCCAUUCCCA---------------------UUCGUCCACACAAUAAAAUCCAAACA
................((((...(((((.((((....(((((....)))))(((((....)))))........---------------------...)))).)))))......))))... ( -25.30)
>DroEre_CAF1 19647 120 + 1
UCUGCUUUAAAUUGAAUUGGCCUUUGUGCGGACACUCGGGCACUCAUGUAUGGCAUACAUGUGCCCAUUCCCAUUCCCCAUUCCCCAUCGUCCAUUCGUCCACACAAUAAAAUCCAAACA
................((((...(((((.((((....((((((..((((((...)))))))))))).......................(......))))).)))))......))))... ( -28.70)
>consensus
UCUGCUUUAAAUUGAAUUGGCCUUUGUGCGGACACUCGUGCACUCGUGUAUGGCAUACAUGUGCCCAUUCCCA_____________________UUCGUCCACACAAUAAAAUCCAAACA
................((((...(((((.((((....(((((....)))))(((((....)))))................................)))).)))))......))))... (-24.10 = -24.35 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:20 2006