| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,193,789 – 5,193,903 |
| Length | 114 |
| Max. P | 0.619079 |
| Location | 5,193,789 – 5,193,903 |
|---|---|
| Length | 114 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 94.92 |
| Mean single sequence MFE | -27.47 |
| Consensus MFE | -23.63 |
| Energy contribution | -22.97 |
| Covariance contribution | -0.66 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.619079 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5193789 114 + 27905053 GAAAAUAU----AUAUGUCUCUAUAUAAAUAUG--GUUUAUAUGGUAAAAUGUAUAGUAGGUAUGUGCUAUCUCAUAAAUACAGGCAACUCGUUGUCAAGUCCUCGGACGUAACGUACUU .....(((----((((....((((((((((...--))))))))))....)))))))..((((((((((...............(((((....)))))..(((....))))).)))))))) ( -27.60) >DroSim_CAF1 713 114 + 1 GAAAAUAU----AUAUGUCUCUAUAUAAAUAUG--GUUUAUGUGGUAAAAUGUAUAGUAGGUAUAUGCUAUCUCAUAAAUACAGGCAACUCGUUGUCAAGUCCUCGGACGUAACGUACUU .....(((----((((....((((((((((...--))))))))))....)))))))(((.((.((((......))))..(((.(((((....)))))..(((....)))))))).))).. ( -25.80) >DroYak_CAF1 736 120 + 1 GAAAAUAUAUGUAUAUGUCUCUAUAUAAAUAUGUAGUUUAUGUGGUAAAAUGUAUAGUAGGUAUAUGCUAUCUCAUAAAUACAGGCAACUCGUUGUCAAGUCCUCGGACGUGACGUACUU .....(((((((.(((((....))))).)))))))(((((((.((((..((((((.....))))))..)))).)))))))..((....)).(((((((.(((....))).))))).)).. ( -29.00) >consensus GAAAAUAU____AUAUGUCUCUAUAUAAAUAUG__GUUUAUGUGGUAAAAUGUAUAGUAGGUAUAUGCUAUCUCAUAAAUACAGGCAACUCGUUGUCAAGUCCUCGGACGUAACGUACUU ............((((....((((((((((.....))))))))))....))))..((((.((.((((......))))..(((.(((((....)))))..(((....)))))))).)))). (-23.63 = -22.97 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:16 2006