| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,193,053 – 5,193,173 |
| Length | 120 |
| Max. P | 0.506114 |
| Location | 5,193,053 – 5,193,173 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.60 |
| Mean single sequence MFE | -30.21 |
| Consensus MFE | -28.15 |
| Energy contribution | -27.93 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.04 |
| Mean z-score | 0.11 |
| Structure conservation index | 0.93 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.506114 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5193053 120 - 27905053 CCUCAGCCAGGCUCGCUCGUGCAUGAUGUCCUUAAUGGACACGCCUACUCGGACAAGCAGGGCGCAAAGAUCGUUGAUUCCGCCAGGACGAUCGCUAACCUCCACAUUAAACUUAACCAG .........(((.(((((.(((.((.(((((.....)))))..((.....)).)).))))))))....(((((.....(((....)))))))))))........................ ( -29.70) >DroSim_CAF1 1 97 - 1 CCUCAGCCAGGCUCGCUCGUGCAUGAUGUCCUUGAUGGACACGCCCACUCGGACCAGCAGAGCGCACAGAUCGUUGAUUCCGCCAGGACGAUCGCUA----------------------- .........(((.(((((.(((.((..((((..(.(((......))))..))))))))))))))....(((((.....(((....))))))))))).----------------------- ( -30.40) >DroYak_CAF1 1 97 - 1 CCUGAGCCAGGCUCGCUCGUGCAUGAUGUCCUUGAUGGACACGCCCACUCGAACCAGCAGGGCGCAAAGAUCGUUGAUUCCGCCAGGACGAUCGCUC----------------------- ...((((...))))((...(((....(((((.....))))).((((.............)))))))..(((((.....(((....))))))))))..----------------------- ( -30.52) >consensus CCUCAGCCAGGCUCGCUCGUGCAUGAUGUCCUUGAUGGACACGCCCACUCGGACCAGCAGGGCGCAAAGAUCGUUGAUUCCGCCAGGACGAUCGCUA_______________________ .........(((.(((((.(((....(((((.....)))))((......)).....))))))))....(((((.....(((....)))))))))))........................ (-28.15 = -27.93 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:14 2006