Locus 1814

Sequence ID 3R_DroMel_CAF1
Location 5,191,465 – 5,191,560
Length 95
Max. P 0.712923
window2988

overview

Window 8

Location 5,191,465 – 5,191,560
Length 95
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 81.47
Mean single sequence MFE -24.18
Consensus MFE -18.11
Energy contribution -16.62
Covariance contribution -1.49
Combinations/Pair 1.46
Mean z-score -1.57
Structure conservation index 0.75
SVM decision value 0.38
SVM RNA-class probability 0.712923
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5191465 95 + 27905053
AUUGACUUACAGAAAUCCACAUCAUCGGAUCUAUAUGGCAUGGAGUUAUAUCUGAAAAAGGAUUUCCUACAAUAUACAGGCAGGUAAGUUAUCAA---------------
..((((((((.(((((((......(((((....((((((.....)))))))))))....)))))))((.(........)..))))))))))....--------------- ( -20.40)
>DroSec_CAF1 286 95 + 1
AUUGACCUACAGAAAUCCACAUCAUCGGACCUAUAUGGCAUGGAGUUGUAUCUGAAAAAGGAUUUCCUGCAAUAUACAGGCAGGUAAGUUAUCGU---------------
..((((.(((.(((((((......(((((....((..((.....))..)))))))....)))))))((((.........))))))).))))....--------------- ( -22.20)
>DroEre_CAF1 284 95 + 1
AGUGACUUGCAGAAAUCCACAUCGUCGGAGCUAUAUGGCAUGGAGUUGUAUCUGAAAAAGGAUUUCCUGCAAUAUACAGGCAGGUAAGUCAUCAG---------------
.(((((((((.(((((((......(((((....((..((.....))..)))))))....)))))))((((.........)))))))))))))...--------------- ( -30.60)
>DroYak_CAF1 284 95 + 1
AUUGAUUUACAGAAAUCCACUUCAUCGGAGCUAUAUGGCAUGGAGUUGUAUCUGAAAAAGGAUUUCCUGCAAUAUACAGGCAGGUGAGUUAUUAA---------------
..((((((((.(((((((......(((((....((..((.....))..)))))))....)))))))((((.........))))))))))))....--------------- ( -24.10)
>DroMoj_CAF1 298 95 + 1
AGUCAUUUGCAGAGGUCCACAUCGUCAGAGACAUAUGGGAUGGAAUUGUAUUUCAAAAAGGACUUUCUACAAUACACAGGCAGGUGAGUGAUCGU---------------
(.((((((((.(((((((.((((.(((........)))))))(((......))).....)))))))...(........))))))))).)......--------------- ( -22.50)
>DroPer_CAF1 311 110 + 1
AGUGGCUUGCAGAAAUCCACUUCUUCGGAUCUAUAUGGCAUGGAGCUUUAUUUGAAAAAGGAUUUCCUACAAUAUACAGGCAGGUGAGUGAUCGGGGAAAUCCUACAAAA
(((((.((.....)).)))))((....))((.(((.(((.....))).)))..))...((((((((((...((.(((......))).)).....))))))))))...... ( -25.30)
>consensus
AGUGACUUACAGAAAUCCACAUCAUCGGAGCUAUAUGGCAUGGAGUUGUAUCUGAAAAAGGAUUUCCUACAAUAUACAGGCAGGUAAGUUAUCAA_______________
..((((((((.(((((((......(((((....((((((.....)))))))))))....)))))))((.........))....))))))))................... (-18.11 = -16.62 +  -1.49)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:12 2006