Locus 1813

Sequence ID 3R_DroMel_CAF1
Location 5,179,351 – 5,179,450
Length 99
Max. P 0.968294
window2987

overview

Window 7

Location 5,179,351 – 5,179,450
Length 99
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 96.06
Mean single sequence MFE -24.02
Consensus MFE -21.66
Energy contribution -21.86
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.66
Structure conservation index 0.90
SVM decision value 1.62
SVM RNA-class probability 0.968294
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5179351 99 - 27905053
UUACUUUCUCAAAGUCGAAAAGUCGACGUGCCGAGCUGCACAUCCAUCAAAAACAAAGUAAGAGAGAGUUAUGGGCGAAAUCCGAGAGAUACACUGAAC
..((((((((...(((((....)))))((((......))))....................))))))))..((((.....))))............... ( -22.60)
>DroSec_CAF1 17935 99 - 1
UUACUUUCUCAAAGUCGAAAAGUCGACGUGCCGAGCUGCACAUCCAUCAAAAACAAAGUAAGAGAGAGUUGUGGGCGAAAUCCGAGACCUACACUGAAC
..((((((((...(((((....)))))((((......))))....................))))))))(((((((.........).))))))...... ( -27.60)
>DroSim_CAF1 18247 99 - 1
UUACUUUCUCAAAGUCGAAAAGUCGACGUGCCGAGCUGCACAUCCAUCAAAAACAAAGUAAGAGAGAGUUAUGGGCGAAAUCCGAGACCUACACUGAAC
..((((((((...(((((....)))))((((......))))....................))))))))...((.((.....))...)).......... ( -23.60)
>DroEre_CAF1 17741 99 - 1
UUACUUUCUCAAAGUCGAAAAGUCGACGUGCUGAGCUGCACAUCCAUCACAAACGAAGUAAGAGAGAGUUAUGGGCGAAAUCCGAGACAUACACUGAAC
..((((((((...(((((....)))))((((......))))....................))))))))((((..((.....))...))))........ ( -25.40)
>DroYak_CAF1 18174 99 - 1
UUACUUUCUCAAAGUCAAAAAGUCGACGUGCCGAGCUGCACAUCCAUCACAAACAAAGUAAGAGAGAGUUAUGGGCGAAAUCCGAGCUAUACACUGAAC
..((((((((...(((........)))((((......))))....................))))))))(((((.((.....))..)))))........ ( -20.90)
>consensus
UUACUUUCUCAAAGUCGAAAAGUCGACGUGCCGAGCUGCACAUCCAUCAAAAACAAAGUAAGAGAGAGUUAUGGGCGAAAUCCGAGACAUACACUGAAC
..((((((((...(((((....)))))((((......))))....................))))))))..((((.....))))............... (-21.66 = -21.86 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:11 2006