| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,176,321 – 5,176,418 |
| Length | 97 |
| Max. P | 0.867712 |
| Location | 5,176,321 – 5,176,418 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 80.20 |
| Mean single sequence MFE | -30.18 |
| Consensus MFE | -19.13 |
| Energy contribution | -20.57 |
| Covariance contribution | 1.44 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.86 |
| SVM RNA-class probability | 0.867712 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5176321 97 + 27905053 UAUAGGGUCAAUCACACUCAAUAUAAACCAGUUAUCAUAUUAGCCGGGCUUUA-AAGUAUA---------------GCUAAUGGGGCCUGGUUUAGUUGGCGAGGUGAGUUGA .......((((((((.(((....((((((((...((.(((((((...(((...-.)))...---------------)))))))))..))))))))......))))))).)))) ( -28.20) >DroSec_CAF1 14886 97 + 1 UAUAGGGUCACUCACGCUCUAUAUAAACCAGUUAUCAUAUAAGCCGGGCUUUU-AAGUAUA---------------GCUAAUGGGGCCUGAUUUAGUUGGCGGGGUGAUUGGA ((((((((.......))))))))....(((((((((...(((..((((((((.-.((....---------------.))...))))))))..)))........))))))))). ( -27.60) >DroSim_CAF1 14864 97 + 1 UAUAGGGUCAAUCACGAUCUAUAUAAACCAGUUAUCAUAUAAGCCGGGCUUUA-AAGUAUA---------------GCUAAUGGGGCCCGAUUUAGUUGGCGGGGUGAUUGGA (((((((((......))))).))))..(((((((((......(((((((((((-.((....---------------.))..))))))))(((...))))))..))))))))). ( -28.10) >DroEre_CAF1 14712 112 + 1 UA-GGGGUCAAUCACGCUCGAUAUAAACCAGUUAUCAUAUAAACCGGGCUUAAAAAGUACAACUAAAUGAUUCCAAGCGAAUGGGGCCAUAUUUAGUUGGCGGGGUGGCUGGA ..-.((((.......))))........(((((((((.......(((.(((.....))).((((((((((.(((((......)))))...)))))))))).)))))))))))). ( -28.41) >DroYak_CAF1 15132 112 + 1 UA-GGGGUCAAUCAUGCUCUAUAUAAACCAGUUAUCAUAUAAGCCGGACUGAAAAAGUGCAACUAAAUGAAUCCCAGCGAAUGGGGUCUGAUUUAGUUGGCGGGGUGACUGGA ..-(((((.......))))).......(((((((((......((((.(((.....))).)((((((((.(((((((.....)))))).).)))))))))))..))))))))). ( -38.60) >consensus UAUAGGGUCAAUCACGCUCUAUAUAAACCAGUUAUCAUAUAAGCCGGGCUUUA_AAGUAUA_______________GCUAAUGGGGCCUGAUUUAGUUGGCGGGGUGACUGGA ((((((((.......))))))))....(((((((((.....((((((((((((...((..................))...))))))))).....))).....))))))))). (-19.13 = -20.57 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:10 2006