Locus 181

Sequence ID 3R_DroMel_CAF1
Location 842,453 – 842,557
Length 104
Max. P 0.970336
window301

overview

Window 1

Location 842,453 – 842,557
Length 104
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 87.95
Mean single sequence MFE -34.35
Consensus MFE -27.40
Energy contribution -27.65
Covariance contribution 0.25
Combinations/Pair 1.03
Mean z-score -2.61
Structure conservation index 0.80
SVM decision value 1.66
SVM RNA-class probability 0.970336
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 842453 104 + 27905053
UUACUUGGCCGACGAGCAACGCUUACU----------------UGGCUGUUAGUUUCAGUUCGAGCUCAGUUUUCGUGCAAUUAAAUUGAGCUAUUUGCGUUUUGUCUGGUCAAAGUUCU
....(((((((((((..(((((.....----------------.(((((.......)))))..((((((((((..........))))))))))....)))))))))).))))))...... ( -31.70)
>DroSec_CAF1 18253 104 + 1
UUACUUGGCCGACGAGCAGCACUAACU----------------UGGCUGUUAGUUUCAGUUCGAGCUCAGUUUUGGUGCAAUUAAAUUGAGCUAUUUGCGUUUUGUCUGGUCAACGUUCU
..((((((((((((((..((((((((.----------------.....)))))).........((((((((((..........))))))))))....))..)))))).)))))).))... ( -31.90)
>DroSim_CAF1 17480 101 + 1
UUACUUGGCCGACGAGCAGCACUAACU----------------UGGCUGUUAGUUUCAGUUCGAGCUCAGUUUUGGUGCAAUUAAAUUGAGCUAUUUGC---UGGUCUGGUCAAAGUUCU
....(((((((((.(((((.((((((.----------------.....)))))).........((((((((((..........))))))))))..))))---).))).))))))...... ( -34.70)
>DroEre_CAF1 19223 120 + 1
UUACUUGGCCGACGAGCAGCGCUAACUUGGCCGGCCAGAGACUUGGCUGUUAGUUUCAGUUCGAGCCCAGUUUUUGUGCAAUUAAAUUGAGCUAUUUGCGUUUUGUCUGGUCAAAGUUCU
....(((((((((((((.((((.((((.(((((..(.((((((........)))))).)..)).))).))))...))))...........((.....))).)))))).))))))...... ( -39.10)
>consensus
UUACUUGGCCGACGAGCAGCACUAACU________________UGGCUGUUAGUUUCAGUUCGAGCUCAGUUUUGGUGCAAUUAAAUUGAGCUAUUUGCGUUUUGUCUGGUCAAAGUUCU
....(((((((((((((...((((((......................))))))....)))).((((((((((..........))))))))))...........))).))))))...... (-27.40 = -27.65 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:15 2006