| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,163,563 – 5,163,661 |
| Length | 98 |
| Max. P | 0.720100 |
| Location | 5,163,563 – 5,163,661 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 66.78 |
| Mean single sequence MFE | -26.10 |
| Consensus MFE | -10.19 |
| Energy contribution | -11.63 |
| Covariance contribution | 1.45 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.69 |
| Structure conservation index | 0.39 |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.720100 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5163563 98 - 27905053 GA---AAAUGUGUGUGACACAUAGGGUGGGAAAGCUCGAGCUUGGGGUUUAUCACCGACACCACCAAGCAAAUAGAAGCACGCAUACAAAUGCGUAUGUGG ..---..(((((.....)))))..(((((..((((....)))).((........))....)))))..((........)).(((((((......))))))). ( -28.60) >DroSec_CAF1 2268 75 - 1 GG--------------------UGGGUGGGAAAGCUCGAGCUUGGGCUUUAUCA------CCACCAAGCAAAUGGAAGCACGCAUACAAAUGCGUAUGUGG ((--------------------(((.((..((((((((....))))))))..))------)))))..((........)).(((((((......))))))). ( -29.70) >DroEre_CAF1 1883 79 - 1 GAGGAAAAUGUGUGCGA--CAUAGGGUGGAAAAG---GAGCUUGGAGUUUAUCA------CCACC-AGCAAAUAGAACGACGCAUACAAAU---------- ........((((((((.--.....(((((.....---((((.....))))....------)))))-..(.....).....))))))))...---------- ( -20.00) >consensus GA___AAAUGUGUG_GA__CAUAGGGUGGGAAAGCUCGAGCUUGGGGUUUAUCA______CCACCAAGCAAAUAGAAGCACGCAUACAAAUGCGUAUGUGG ........................(((((..((((....)))).((.....)).......)))))..............((((((....))))))...... (-10.19 = -11.63 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:58 2006