Locus 1802

Sequence ID 3R_DroMel_CAF1
Location 5,153,317 – 5,153,407
Length 90
Max. P 0.935213
window2970

overview

Window 0

Location 5,153,317 – 5,153,407
Length 90
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 90.74
Mean single sequence MFE -23.22
Consensus MFE -21.31
Energy contribution -21.33
Covariance contribution 0.03
Combinations/Pair 1.04
Mean z-score -1.61
Structure conservation index 0.92
SVM decision value 1.24
SVM RNA-class probability 0.935213
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5153317 90 - 27905053
AACAAAAGCAAUUUGAAAACAAUUUUUCGAGUUUCGAGAAAAACGUGUGGCCCCGUGCGGUCGUGGCCUACAUGCUUAUAGGCUAAA---------AAA
......(((.............(((((((.....)))))))..(((((((((.((......)).)))).))))).......)))...---------... ( -23.00)
>DroSec_CAF1 27296 92 - 1
AACAAAAGCAAUUUGAAAACAAUUUUUCGAGUUUCGAGAAAAACGUGUGGCCCUGUGCGGUCGUGGCCUACAUGCUUAUGGGCUUAAAC-------AAA
.....((((.............(((((((.....)))))))..(((((((((.((......)).)))).))))).......))))....-------... ( -22.30)
>DroSim_CAF1 26882 93 - 1
AACAAAAGCAAUUUGAAAACAAUUUUUCGAGUUUCGAGAAAAACGUGUGGCCCUGUGCGGUCGUGGCCUACAUGCUUAUGGGCUUAAAA------AAAA
.....((((.............(((((((.....)))))))..(((((((((.((......)).)))).))))).......))))....------.... ( -22.30)
>DroEre_CAF1 25813 91 - 1
AACAAAAGCAAUUUGAAAACAAUUUUUCGAGUUUCGAGAAAAACGUGUGGCCCUGUGCGGUCGUGGCCUACAUGCUUAUGGGCUA--------AAAAAA
..((.(((((............(((((((.....)))))))...(((.((((.((......)).))))))).))))).)).....--------...... ( -22.20)
>DroYak_CAF1 24973 99 - 1
AACAAAAGCAAUUUGAAAACAAUUUUUCGAGUUUCGAGAAAAACGUGUGGCCCUGUGCGGUCGUGGCCUACAUGCUUAUGGGCUUAAUCAAAAAAAAAA
.....((((.............(((((((.....)))))))..(((((((((.((......)).)))).))))).......)))).............. ( -22.30)
>DroAna_CAF1 47263 90 - 1
AACAAAAGCAAUUUGAAAACAAUUUUUCGAGUUUCGAGCAAAACGUGUGGCCCUGUGCGGUCGUGGCCUACAUGCUUAUGGC-UCAG-C-------UCC
......(((((((((((((....))))))))))..((((....(((((((((.((......)).)))).)))))......))-)).)-)-------).. ( -27.20)
>consensus
AACAAAAGCAAUUUGAAAACAAUUUUUCGAGUUUCGAGAAAAACGUGUGGCCCUGUGCGGUCGUGGCCUACAUGCUUAUGGGCUUAA_C_______AAA
..((.((((((((((((((....))))))))))...........((((((((.((......)).)))).)))))))).))................... (-21.31 = -21.33 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:55 2006