Locus 180

Sequence ID 3R_DroMel_CAF1
Location 841,327 – 841,422
Length 95
Max. P 0.727955
window300

overview

Window 0

Location 841,327 – 841,422
Length 95
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 82.95
Mean single sequence MFE -38.88
Consensus MFE -26.10
Energy contribution -26.23
Covariance contribution 0.12
Combinations/Pair 1.07
Mean z-score -1.84
Structure conservation index 0.67
SVM decision value 0.42
SVM RNA-class probability 0.727955
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 841327 95 - 27905053
CGUAAUGCAUAUG-------------CCCACAUGGGUUCGCAAUGGUUACAGAUGUAGGUACAGCCAUGGCUGGUGGGUUGUGGAUCAGUGGAUCGGUGGAUCGGUGG------------
......((....)-------------)((((...(((((((((((.((((....)))).).((((....))))....))))))))))....((((....)))).))))------------ ( -28.50)
>DroSec_CAF1 17088 99 - 1
CGUAAUGCAUAUG-------------CCCACAUGGGUUCGCAGUGGUUACAGAUGUAGCUACAGCCAUGGCUGGUGGGUUGUGGAUCAGUGGAUCGGUGGAUCGGUGGAUCG--------
.......((((.(-------------(((((...........((((((((....))))))))(((....))).))))))))))((((..(.((((....)))).)..)))).-------- ( -36.70)
>DroSim_CAF1 16308 107 - 1
CGUAAUGCAUAUG-------------CCCACAUGGGUUCGCAGUGGUUACAGAUGUAGCUACAGCCAUGGCUGGUGGGUUGUGGAUCAGUGGAUCGGUGGAUCGGUGGAUCGGCGGAUCG
....((.((((.(-------------(((((...........((((((((....))))))))(((....))).)))))))))).)).....((((.((.((((....)))).)).)))). ( -41.50)
>DroEre_CAF1 18102 108 - 1
CGUAAUGCUAAUGCUUGCAGCGCCGGCCCACAUGGGUUCGCCAUGGUUACAGAUGUAGCUGCAGCCA----UGGUGGGUUGUGGAUCAGUGGAUCGGCGGAUCGGCGGAUCG--------
.((((.((....))))))..(((((..((.....((..((((((((((.(((......))).)))))----)))))..))((.((((....)))).))))..))))).....-------- ( -48.80)
>consensus
CGUAAUGCAUAUG_____________CCCACAUGGGUUCGCAAUGGUUACAGAUGUAGCUACAGCCAUGGCUGGUGGGUUGUGGAUCAGUGGAUCGGUGGAUCGGUGGAUCG________
...........................((((...(((((((...((((((....))))))((((((..........)))))).((((....)))).))))))).))))............ (-26.10 = -26.23 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:12 2006