Locus 18

Sequence ID 3R_DroMel_CAF1
Location 189,415 – 189,529
Length 114
Max. P 0.833989
window33

overview

Window 3

Location 189,415 – 189,529
Length 114
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.23
Mean single sequence MFE -43.23
Consensus MFE -30.72
Energy contribution -30.12
Covariance contribution -0.60
Combinations/Pair 1.32
Mean z-score -1.76
Structure conservation index 0.71
SVM decision value 0.73
SVM RNA-class probability 0.833989
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 189415 114 + 27905053
GGCGGCCUUAUCCUCCACAUACUGGUGGCAGUCUUCACUUUCUUCGGGUUGGCAAUAGUUUGCGAUGAGUACUUUGUGGCCAGUCUGGAUCGGCUUUGCGAGGGUGAGUCCU------CA
.(.((.(((((((((..((.((((((.(((((.(((((..((....))..)((((....))))..)))).))..))).)))))).)).....((...))))))))))).)).------). ( -39.00)
>DroVir_CAF1 24555 114 + 1
GGUGGACUCAUCCUGCACAUUCUGGUGGCCAUCUAUACGUUCUUCGGCCUGGCUAUUGUGUGCGAUGAGUACUUUGUGGCCAGUCUGGACCGGUUGUGCGAGGGUGAGCCGA------AC
..(((.(((((((((((((..(((((((((...............))))(((((((...((((.....))))...)))))))......))))).))))).))))))))))).------.. ( -51.26)
>DroGri_CAF1 23621 114 + 1
GGUGGACUCAUUAUACACAUUCUGGUGGCCAUUUUCACGUUCUUUGGCCUGGCCAUUGUGUGCGAUGAGUACUUUGUGGCCAGUCUGGACAGGCUGUGCGAGGGUGAGCUCG------GC
.((.((((((((...((((..(((((((......))))....((..(.((((((((...((((.....))))...)))))))).)..)))))..))))....)))))).)).------)) ( -43.70)
>DroWil_CAF1 36909 114 + 1
GGCGGCCUUAUUCUCCACAUCCUGGUGGCAGUUUUCACUUUCUUCGGCCUCGCCAUUGUGUGCGAUGAGUACUUUGUGGCCAGCUUGGAUCGCUUGUGCGAGGGUAAGUCAA------UU
...(((.(((((((((((((((.((((((.................)))..(((((...((((.....))))...)))))..))).))).....)))).)))))))))))..------.. ( -34.93)
>DroMoj_CAF1 26507 114 + 1
GGUGGACUCAUCCUACACAUUAUCGUGGCCAUCUAUACCUUCUUUGGCCUGGCCAUUGUGUGCGACGAGUACUUUGUGGCCAGUUUGGACCGGCUGUGCGAGGGUGAGCUCU------AC
.(((((((((((((.(.(((..(((.(((((.............)))))(((((((...((((.....))))...)))))))........)))..))).))))))))).)))------)) ( -46.62)
>DroAna_CAF1 22981 120 + 1
GGCGGCCUCAUCUUGCACAUCCUGGUGGCAGUCUUCACCUUCUUCGGGCUGGCCAUCGUCUGCGACGAGUACUUUGUGGCCAGUCUGGAUCGACUGUGCGAGGGUAAGAUAAUGAUUUCA
....(((....((((((((((..(((((......)))))...((((((((((((((.(..(((.....)))..).))))))))))))))..)).)))))))))))............... ( -43.90)
>consensus
GGCGGACUCAUCCUACACAUUCUGGUGGCAAUCUUCACCUUCUUCGGCCUGGCCAUUGUGUGCGAUGAGUACUUUGUGGCCAGUCUGGACCGGCUGUGCGAGGGUGAGCCCA______AC
...((.((((((((.(.(((....(((........)))....(((((.((((((((...((((.....))))...)))))))).)))))......))).))))))))))).......... (-30.72 = -30.12 +  -0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:21 2006