Locus 1796

Sequence ID 3R_DroMel_CAF1
Location 5,127,518 – 5,127,609
Length 91
Max. P 0.737461
window2960

overview

Window 0

Location 5,127,518 – 5,127,609
Length 91
Sequences 5
Columns 92
Reading direction reverse
Mean pairwise identity 90.01
Mean single sequence MFE -25.02
Consensus MFE -20.54
Energy contribution -20.82
Covariance contribution 0.28
Combinations/Pair 1.08
Mean z-score -1.52
Structure conservation index 0.82
SVM decision value 0.44
SVM RNA-class probability 0.737461
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5127518 91 - 27905053
-UGGCAAGUGGAAACUGGAUGCUGUGAAGAGCAUCGACAUAAUGGCCGGACGAUAAGUGUGCUGGACAGGCGCAGCUUUGGCAUUGUAAAUA
-.(((.(((....))).((((((......)))))).........)))..(((((...((((((.....))))))((....)))))))..... ( -26.90)
>DroSec_CAF1 9315 84 - 1
--------UAGAAACUGGAUGCUGUGAAGAGCAUCGACAUAAUGGCCGGACGAUAAGUGUGCUGGACAGGCGCAGCUUUGGCAUUGUAAAUA
--------.........((((((......))))))...((((((.(((((.(.....((((((.....)))))).))))))))))))..... ( -22.60)
>DroSim_CAF1 6036 84 - 1
--------UAGAAACUGGAUGCUGUGAAGAGCAUCGACAUAAUGGCCGGACGAUAAGUGUGCUGGACAGGCGCAGCUUUGGCAUUGUAAAUA
--------.........((((((......))))))...((((((.(((((.(.....((((((.....)))))).))))))))))))..... ( -22.60)
>DroEre_CAF1 6988 82 - 1
--------UGGGAACUGGAUGCUGUGAG--GCAUCGACAUAAUGGCCAGACGAUAAGUGUGCUGGACAGGCGCAGCUUUGGCAUUGUAAAUA
--------.........((((((....)--)))))...((((((.(((((.(.....((((((.....)))))).))))))))))))..... ( -23.30)
>DroYak_CAF1 6481 90 - 1
ACAGCAAGUGGCAACUGGAUGCUGUGAA--GCAUCGACAUAAUGGCCGGACGAUAAGUGUGCCGGACAGGCGCAGCUUUGCCAUUGUAAAUA
...((((.(((((((((((((((....)--))))).......((.(((((((.....))).)))).))....)))..))))))))))..... ( -29.70)
>consensus
________UGGAAACUGGAUGCUGUGAAGAGCAUCGACAUAAUGGCCGGACGAUAAGUGUGCUGGACAGGCGCAGCUUUGGCAUUGUAAAUA
.................((((((......))))))...((((((.(((((.(.....((((((.....)))))).))))))))))))..... (-20.54 = -20.82 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:46 2006