| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,118,185 – 5,118,300 |
| Length | 115 |
| Max. P | 0.625861 |
| Location | 5,118,185 – 5,118,300 |
|---|---|
| Length | 115 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 89.65 |
| Mean single sequence MFE | -39.83 |
| Consensus MFE | -29.90 |
| Energy contribution | -31.77 |
| Covariance contribution | 1.88 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.625861 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5118185 115 + 27905053 ACGUAUUUUAUUCCUUUGACUUUGGUCCUGCUCUUGUCCUGCGGAAUACUUCGGGGCA-----UACUUGAGUAGUCAAAGGAGCGGAAGCCACGCGGUCGCCUAAUGAAGCGCACUUGCA ..((.......((((((((((........((((.(((((((.((....)).)))))))-----.....))))))))))))))((....)).))((((((((........))).)).))). ( -37.50) >DroSim_CAF1 20360 115 + 1 ACGUAUUUUAUUCCUUUGACUUUGGUCCUGCUCUUGUCCUGCGGAAUACCUCGGGGCA-----UACUUGAGUAGUCAAAGGAGCGGAAACCACGCGGUCGCCUAAUGAAGCGCACUGCCA .....(((..(((((((((((........((((.(((((((.((....)).)))))))-----.....)))))))))))))))..))).....((((((((........))).))))).. ( -41.80) >DroEre_CAF1 21221 120 + 1 ACGGAUUUUAUUCCUUUGACUUCGGCCGUGCUCUUGUCCUGCGGAAUACCUCAGAGUAUUGAGUACUUGAGUAGUCAAAGGAGCGGAAGCCACGCGGACGCCUAAUGAAGCACACGGCCA ..(((......))).........(((((((.....((((.(((.....(((.......((((.(((....))).))))))).((....))..)))))))((........)).))))))). ( -40.71) >DroYak_CAF1 21216 120 + 1 ACGGAUUUUAUUCCUUUGACUUUGGCCCAGCUCUUGUCCUGCCGAAUACCUCAGGGUAUUGAGUACUUGAGUAGUCAAAGGAGCGGAAGCCACGCGGUCGCCUAAUGAAGCGCACAGCCA ..((.(((..((((((((((((((((...((....))...))))))...((((((..........))))))..))))))))))..))).))..((.(((((........))).)).)).. ( -39.30) >consensus ACGGAUUUUAUUCCUUUGACUUUGGCCCUGCUCUUGUCCUGCGGAAUACCUCAGGGCA_____UACUUGAGUAGUCAAAGGAGCGGAAGCCACGCGGUCGCCUAAUGAAGCGCACUGCCA ..((.(((..(((((((((((........((((.(((((((.((....)).)))))))..........)))))))))))))))..))).))..((((((((........))).))))).. (-29.90 = -31.77 + 1.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:38 2006