Locus 179

Sequence ID 3R_DroMel_CAF1
Location 839,676 – 839,788
Length 112
Max. P 0.649833
window299

overview

Window 9

Location 839,676 – 839,788
Length 112
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 90.74
Mean single sequence MFE -25.33
Consensus MFE -23.15
Energy contribution -23.58
Covariance contribution 0.44
Combinations/Pair 1.07
Mean z-score -1.40
Structure conservation index 0.91
SVM decision value 0.24
SVM RNA-class probability 0.649833
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 839676 112 - 27905053
ACAAUUGCAAUUGCAUUUGCAGUGGCAAUA---ACAACUGCAGCCACAUGAGCGUACAACAGGCAAUGAAAUGGGCUUUUAAUCAAUUUCCGGUAUUAAAGUCUAGCCAAACCCA-----
...(((((((......)))))))(((....---.........(((...((......))...))).......((((((((..(((.......)))...))))))))))).......----- ( -23.20)
>DroSec_CAF1 15411 115 - 1
ACAAAUGCAAUUGCAAUUGUAGUGGCAACAACAACAACUGCAGCCACAUGAGCGUACAACAGGCAAUGAAAUGGGCUUUUAAUCAAUUUCCGGUAUUAAAGUCUAGCCAAACCUA-----
((((.(((....))).)))).(((((..((........))..)))))..............(((.......((((((((..(((.......)))...))))))))))).......----- ( -24.21)
>DroSim_CAF1 14636 115 - 1
ACAAAUGCAAUUGCAUUUGCAGUGGCAACAACAACAACUGCAGCCACAUGAGCGUACAACAGGCAAUGAAAUGGGCUUUUAAUCAAUUUCCGGUAUUAAAGUCUAGCCAAACCCA-----
.(((((((....)))))))..(((((..((........))..)))))..............(((.......((((((((..(((.......)))...))))))))))).......----- ( -26.41)
>DroEre_CAF1 16476 117 - 1
ACAAUUGCAACAGCAGUUACAGUGGCAACA---ACAAUUGCUGCCACAUGAGCGUACAGCAGGCAAUGAAAUGGGCUUUUAAUCAAUUUCCGGUAUUAAAGUCUAGCCAAACCAAGCGAC
..((((((....)))))).((((((((.((---.....)).)))))).)).((.....)).(((.......((((((((..(((.......)))...)))))))))))............ ( -27.51)
>consensus
ACAAAUGCAAUUGCAUUUGCAGUGGCAACA___ACAACUGCAGCCACAUGAGCGUACAACAGGCAAUGAAAUGGGCUUUUAAUCAAUUUCCGGUAUUAAAGUCUAGCCAAACCCA_____
.(((((((....)))))))..(((((..((........))..)))))..............(((.......((((((((..(((.......)))...)))))))))))............ (-23.15 = -23.58 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:10 2006