| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,112,950 – 5,113,070 |
| Length | 120 |
| Max. P | 0.800282 |
| Location | 5,112,950 – 5,113,070 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 95.25 |
| Mean single sequence MFE | -34.74 |
| Consensus MFE | -30.50 |
| Energy contribution | -31.70 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.88 |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.800282 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5112950 120 - 27905053 AAUAAUUGCGCCUCCGGUGCACGACUUCUGCGGAUACCACAUUACUUCCGUGGGGCAUUUAUAAUUCAGGAGUCGUGACACCGCCAACGACUUUCGAUGACUCCGACGUGCUCACAUUAC .......((((.((((((((((((((((((..(...((((.........))))..)..........))))))))))).))))).((.((.....)).)).....)).))))......... ( -36.30) >DroSec_CAF1 14604 120 - 1 AAUAAUUGCGCCUCCGGUGCACGACUUCUGCGGAUACCACAUUACUUCCGUGGGGCAUUUAUAAUUCAGGAGUCGUGACACCGCCAACAACUUUCGAUGACUGCGACGUGCUCACAUUAU .......((((.((.(((((((((((((((..(...((((.........))))..)..........))))))))))).))))((...((........))...)))).))))......... ( -34.10) >DroSim_CAF1 15153 120 - 1 AAUAAUUGCGCCUCCGGUGCACGACUUCUGCGGAUACCACAUUACUUCCGUGGGGCAUUUAUAAUUCAGGAGUCGUGACACCGCCAACGACUUUCGAUGACUGCGACGUGCUCACAUUAU .......((((.((((((((((((((((((..(...((((.........))))..)..........))))))))))).))))).((.((.....)).)).....)).))))......... ( -36.30) >DroEre_CAF1 15991 120 - 1 AAUAAUUGCGCCUCCGGCACACGACUUCUGUGGAUACCACAUUCCAUCCGUGGGGCAUUUAUAAUUCAGGAGUCGUGACACCGCCAACGACUUUCGAUGACUCCGACGUGCGCACAUUAU .(((((((((((..(((..((((((((((((((...)))).(((((....)))))............)))))))))).......((.((.....)).))...)))..).))))).))))) ( -36.00) >DroYak_CAF1 15872 120 - 1 AAUAAUGGCGCCUCCGGCACUCGACUUCUGCGGAUACCACAUAACUUCCGUGGGGCAUUUAUAAUUCAGGAGUCGUGACACCGCCAACGACUUUCGAUGACUCCGACGUGCUCACAUUAA ..(((((.((....))((((((...(((..((((............))))..))).............(((((((((....)))...((.....))..)))))))).))))...))))). ( -31.00) >consensus AAUAAUUGCGCCUCCGGUGCACGACUUCUGCGGAUACCACAUUACUUCCGUGGGGCAUUUAUAAUUCAGGAGUCGUGACACCGCCAACGACUUUCGAUGACUCCGACGUGCUCACAUUAU .......((((.((((((((((((((((((..(...((((.........))))..)..........))))))))))).))))).((.((.....)).)).....)).))))......... (-30.50 = -31.70 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:21 2006