Locus 178

Sequence ID 3R_DroMel_CAF1
Location 838,737 – 838,856
Length 119
Max. P 0.652343
window298

overview

Window 8

Location 838,737 – 838,856
Length 119
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 82.40
Mean single sequence MFE -32.10
Consensus MFE -23.03
Energy contribution -23.84
Covariance contribution 0.81
Combinations/Pair 1.03
Mean z-score -1.65
Structure conservation index 0.72
SVM decision value 0.25
SVM RNA-class probability 0.652343
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 838737 119 - 27905053
UUCCAUUGCACACGUCGUGCAUCCUGGCCACAAGUGAACGCUGUCCAUAGGAUGUGUGAAUGCACAGUGAAAAACAUUGGGGGACUGUAA-AGAAAUGAUUUUAAUUGGCUUCAGCAAUA
....(((((.....(((..(((((((...(((.((....)))))...)))))))..)))..((.((((.((((.((((((....))....-...)))).)))).))))))....))))). ( -32.01)
>DroSec_CAF1 14230 119 - 1
UUGAUUUGCACACGUCGUGCAUCCUGGCCACAAGAGAACCCUGGCCAUGGGAUGUGUGAUUGCACAGUGAAAAACACA-GUGAACUGUAAUAAAAAUUAUUUUAAUUGGCUUGAGCAAUA
.....((((.((.((((..(((((((((((...........)))))..))))))..)))).((.((((.......(((-(....))))..(((((....))))))))))).)).)))).. ( -34.10)
>DroSim_CAF1 13722 119 - 1
UUGAAUUGCACACGUCGUGCAUCCUGGCCACAAGUGAACCCUGGCCAUGGGAUGUGUGAUUGCACAGUGAAAAACACA-GUGAACUGUAAUAAAAAUUAUUUUAAUUGGCUUGAGCAAUA
....(((((.((.((((..(((((((((((...(....)..)))))..))))))..)))).((.((((.......(((-(....))))..(((((....))))))))))).)).))))). ( -36.60)
>DroEre_CAF1 15733 99 - 1
UUGGAUUGCACACGUCGUGCAUCCUGACCACCACUGAACGCUGGCCACGGGAUGUGUGAAUGCACCGUGAAAAACA---------------------UAUUUUAAUUGGCUUGAGCAAUG
....(((((.((..(((..(((((((....(((........)))...)))))))..)))..((....(((((....---------------------..)))))....)).)).))))). ( -25.70)
>consensus
UUGAAUUGCACACGUCGUGCAUCCUGGCCACAAGUGAACCCUGGCCAUGGGAUGUGUGAAUGCACAGUGAAAAACACA_GUGAACUGUAA_AAAAAUUAUUUUAAUUGGCUUGAGCAAUA
....(((((.....(((..(((((((((((...........)))))..))))))..)))..((.((((.((((..........................)))).))))))....))))). (-23.03 = -23.84 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:08 2006