| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,102,396 – 5,102,507 |
| Length | 111 |
| Max. P | 0.786457 |
| Location | 5,102,396 – 5,102,507 |
|---|---|
| Length | 111 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 83.36 |
| Mean single sequence MFE | -28.89 |
| Consensus MFE | -17.00 |
| Energy contribution | -17.60 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.36 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.786457 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5102396 111 + 27905053 CCCUCUGAGUCCAUCUGGCCAACAUGUGUGUGUGUGUGUAUUUGACGCUCCUCACGCACCAAAAAAAAGGAACAUGUAUAUG------UAUUUAUAU---UAAGGCAGAGCAAAAAAAAA ..((((((.....))..(((.(((((((((((.(.((((.....)))).)..))))).((........)).))))))(((((------....)))))---...))))))).......... ( -24.80) >DroSec_CAF1 9130 102 + 1 CCCUCUGGGUCCAUCUGGCCAACAUGUGU------GUGUAUUUGACGCUACUCACGCACCAAAAAAAAGGAACAUGUAAAUG------UAUUUAUAUA--UAAGGCAGAGCAAAAA---- ..(((((((((.....)))).((((((((------(((..............))))).((........)).))))))...((------(((....)))--))...)))))......---- ( -22.14) >DroSim_CAF1 9361 105 + 1 CCCUCUGGGUCCAUCUGGCCAACAUGUGUG----UGUGUAUUUGACGCUACUCACGCACCAAAAAAAA-GAACUUGUAUAUG------UAUUUAUAUA--UAAGGCAGAGCAAAAAAA-- ..(((((((((.....)))).....(((((----((.(((........))).))))))).........-...((((((((((------....))))))--)))).)))))........-- ( -30.40) >DroEre_CAF1 9408 106 + 1 CCCUCUGGGUCCAGCUGGCCAACUUGGGUG--UGUGUGUAUUUGACGCUCCUCACGCACCAAAAAAA-GAAA----UAUAUGUAUAUGUAUUUACAUG--UAUGGCAGAGCAAAA----- (((...)))....(((.(((...(((((((--((.((((.....))))....))))).)))).....-...(----((((((((........))))))--))))))..)))....----- ( -32.20) >DroYak_CAF1 10311 114 + 1 CCCUCUGGGUCCAUCUGGCCAACAUGUGUGUGUGUGUGUAUUUGACGCUCCUCACGCACCAAAAAAA-GAAACACGUAUAUGUAUUUAUAUAUAUAUGUAUAUGGCAGAGCAAAA----- ..(((((((((.....))))..((((((((((((.((((.....))))....)))))))........-.....(((((((((((....)))))))))))))))).))))).....----- ( -34.90) >consensus CCCUCUGGGUCCAUCUGGCCAACAUGUGUG__UGUGUGUAUUUGACGCUCCUCACGCACCAAAAAAAAGGAACAUGUAUAUG______UAUUUAUAUA__UAAGGCAGAGCAAAAA____ ..(((((((((.....))))....((((((.....((((.....))))....))))))...............................................))))).......... (-17.00 = -17.60 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:02 2006