| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,098,712 – 5,098,860 |
| Length | 148 |
| Max. P | 0.665404 |
| Location | 5,098,712 – 5,098,827 |
|---|---|
| Length | 115 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 87.26 |
| Mean single sequence MFE | -26.99 |
| Consensus MFE | -18.36 |
| Energy contribution | -18.08 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.665404 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5098712 115 - 27905053 AGACCGGAGGGGCUGGCCAAAAUGUGAGGGUGACCGGAAAUGGGCAAAAAGUGUUGCGGGCAACUGAAAAUGGGUGAAUAU----AUUCU-UUUUACAUAUAAAUAUGAGAACAAGAAAA ..(((...((.(((.(((...((....((....))....)).)))....))).)).(((....)))......)))......----.((((-((((.((((....)))).))).))))).. ( -24.70) >DroSec_CAF1 5782 120 - 1 AGACCGGAGGGGCUGGCGAAAAUGUGAGGAUGACCGGAAAUGGGCUAAAAGUGUUGCAGGAAACUGAAAAUGUGUAAAUGUAUAUAUUUUUUUUUGCAUAUAAAUACGAGCACAAGAAAA ...((((..(..((.((......)).))..)..))))...((.(((....(((((.(((....)))...(((((((((..............))))))))).))))).))).))...... ( -27.64) >DroSim_CAF1 5757 119 - 1 AGACCGGAGGGGCUGGCCAAAAUGUGAGGAUGACCGGAAAUGGGCUAAAAGUGUUGCAGGCAACUGAAAAUGUGUAAAUAUAUAUAUUUU-UUUUGCAUAUAAAUAAGAGCACAAGAAAA ...((((..(..((.((......)).))..)..))))...((.(((.....((((....((((..(((((((((((....))))))))))-).)))).....))))..))).))...... ( -25.30) >DroEre_CAF1 5863 114 - 1 AGACCGGAGGGGCUGGCCAAAAGGUGAGCAUGACCGGAAAUGGGCAAAAAGUGUGGCAGGCAACUGAAAAUGGGCAAAUA------UUUUUGUUUGCAUAUAAAUAAGAGCACAGGAAAA ...((((....(((.(((....))).)))....)))).............((((..(((....))).......(((((((------....)))))))............))))....... ( -33.30) >DroYak_CAF1 6615 113 - 1 UGAGCGGAGGGGCUGGCCAAACUGUGAGGAUGACCGGAAAUGGGCAAAAAGUGUUGCAGGCAACUGAAAAUGGGCAAAUA------UUCCU-UUUGCAUAUAAAUAAGAGCAUACGAAAA ...(((((((((((((.((..(.....)..)).))))......((.....((....(((....)))...))..)).....------.))))-)))))....................... ( -24.00) >consensus AGACCGGAGGGGCUGGCCAAAAUGUGAGGAUGACCGGAAAUGGGCAAAAAGUGUUGCAGGCAACUGAAAAUGGGUAAAUAU____AUUUUUUUUUGCAUAUAAAUAAGAGCACAAGAAAA ...((((..(..((.((......)).))..)..)))).............(((((.(((....))).......(((((..............)))))...........)))))....... (-18.36 = -18.08 + -0.28)
| Location | 5,098,747 – 5,098,860 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 91.19 |
| Mean single sequence MFE | -30.10 |
| Consensus MFE | -24.85 |
| Energy contribution | -25.29 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.538275 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5098747 113 + 27905053 UAUUCACCCAUUUUCAGUUGCCCGCAACACUUUUUGCCCAUUUCCGGUCACCCUCACAUUUUGGCCAGCCCCUCCGGUCUUGACAAGGCCACAAACUGGGCCUGCGGCUGAGG------- ............(((((((((..((((......))))........(((((...........))))).((((....(((((.....))))).......))))..))))))))).------- ( -29.60) >DroSec_CAF1 5822 113 + 1 CAUUUACACAUUUUCAGUUUCCUGCAACACUUUUAGCCCAUUUCCGGUCAUCCUCACAUUUUCGCCAGCCCCUCCGGUCUUGACAUGGCCACAAACUGGGCCUGCGGCUGAGG------- ..............(((....))).......(((((((.......((....))..........((..((((....((((.......)))).......))))..))))))))).------- ( -23.00) >DroSim_CAF1 5796 113 + 1 UAUUUACACAUUUUCAGUUGCCUGCAACACUUUUAGCCCAUUUCCGGUCAUCCUCACAUUUUGGCCAGCCCCUCCGGUCUUGACAAGGCCACAAACUGGGCCUGCGGCUGAGG------- ................((((....))))...(((((((((.....(((((...........))))).((((....(((((.....))))).......)))).)).))))))).------- ( -30.20) >DroEre_CAF1 5897 113 + 1 UAUUUGCCCAUUUUCAGUUGCCUGCCACACUUUUUGCCCAUUUCCGGUCAUGCUCACCUUUUGGCCAGCCCCUCCGGUCUUGACAAGGCCACAAACUGGGCCUGCGGCUGAGG------- ............(((((((((..(((.((.(((..(((((...((((....(((..((....))..)))....))))...))....)))...))).)))))..))))))))).------- ( -34.10) >DroYak_CAF1 6648 120 + 1 UAUUUGCCCAUUUUCAGUUGCCUGCAACACUUUUUGCCCAUUUCCGGUCAUCCUCACAGUUUGGCCAGCCCCUCCGCUCAUGACAAGGCCACAAACUGGGCCUGCGACUGAGGUACAGCA ....(((....((((((((((..((((......)))).(((....(((((..(.....)..)))))(((......))).)))...(((((........)))))))))))))))....))) ( -33.60) >consensus UAUUUACCCAUUUUCAGUUGCCUGCAACACUUUUUGCCCAUUUCCGGUCAUCCUCACAUUUUGGCCAGCCCCUCCGGUCUUGACAAGGCCACAAACUGGGCCUGCGGCUGAGG_______ ............(((((((((..............(((((.....(((((...........))))).........((((.......))))......)))))..)))))))))........ (-24.85 = -25.29 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:54 2006