Locus 1766

Sequence ID 3R_DroMel_CAF1
Location 5,095,634 – 5,095,725
Length 91
Max. P 0.500000
window2899

overview

Window 9

Location 5,095,634 – 5,095,725
Length 91
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 74.63
Mean single sequence MFE -27.37
Consensus MFE -10.86
Energy contribution -11.70
Covariance contribution 0.84
Combinations/Pair 1.22
Mean z-score -1.94
Structure conservation index 0.40
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5095634 91 - 27905053
UCAAAGAGACUGUGCACAUCACGCUGCUCGAAGGCGGAAUCUAUGGCUUCGUUAAAUAGGCUAUCAAAA-AGAAAGUUGUG------------CUACCGUUAAA
.......(((.(((((((.(...(((((....)))))..((((((((((........))))))).....-)))..).))))------------).)).)))... ( -19.90)
>DroPse_CAF1 3520 104 - 1
UCGUAGAGGCUGUGCAGAUCCCGCUGCUCGAAGGCGCAGUCGAUGGCCUCCUCGAAAUAGCUAAAGGAGAUUGAAGGUAUACAAUAUAAGAUCUUUCAGUGCAU
(((..((((((((...(((..((((.......))))..))).))))))))..)))....((....(((((((....((((...))))..)))))))....)).. ( -29.70)
>DroSim_CAF1 2795 91 - 1
UCAAACAGACUGUGCACAUCACGCUGCUCGAAGGCGGAAUCUAUGGCUUCGUUAAAUAGGCUAUCGAAA-AGAAAGUUGUG------------CUUCAGUUAAA
.......(((((.(((((.(...(((((....)))))..((.(((((((........))))))).))..-.....).))))------------)..)))))... ( -24.60)
>DroEre_CAF1 2786 91 - 1
UCAAAGAGACUGUGCACAUCCCGCUGCUCGAAGGCGGAAUCUAUGGCUUCGUUAAAUAAGCUAUCGAAA-AGAAAGUUGUG------------CUACAGUUAAA
.......(((((((((((..(((((.......)))))..((.(((((((........))))))).))..-.......))))------------).))))))... ( -28.60)
>DroYak_CAF1 2798 91 - 1
UCAAAGAGACUGUGCACAUCCCGCUGCUCGAAGGCGGAAUCAAUGGCUUCGUGAAAUAAGCUAUCGAAA-AGAAAGUUGUG------------CUACAGUUAAG
.......(((((((((((..(((((.......)))))..((.(((((((........))))))).))..-.......))))------------).))))))... ( -28.60)
>DroPer_CAF1 3498 104 - 1
UCGUAGAGGCUAUGCAGAUCCCGCUGCUCGAAGGCGCAGUCGAUGGCCUCCUCGAAAUAGCUAAAGGAGAUUAAAGGUAUACAAUAUAAGAUCUUUUAGUGCAU
(((..((((((((...(((..((((.......))))..))).))))))))..)))....(((((((((..(((...(....)....)))..))))))))).... ( -32.80)
>consensus
UCAAAGAGACUGUGCACAUCCCGCUGCUCGAAGGCGGAAUCUAUGGCUUCGUUAAAUAAGCUAUCGAAA_AGAAAGUUGUG____________CUACAGUUAAA
.......(((((.........((((.......))))...((.(((((((........))))))).)).............................)))))... (-10.86 = -11.70 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:46 2006