Locus 1762

Sequence ID 3R_DroMel_CAF1
Location 5,081,688 – 5,081,786
Length 98
Max. P 0.516241
window2894

overview

Window 4

Location 5,081,688 – 5,081,786
Length 98
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 75.92
Mean single sequence MFE -21.57
Consensus MFE -11.07
Energy contribution -11.77
Covariance contribution 0.70
Combinations/Pair 1.38
Mean z-score -1.67
Structure conservation index 0.51
SVM decision value -0.03
SVM RNA-class probability 0.516241
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5081688 98 + 27905053
CUGCCUGUAUUUCUGUCUUGAUCACUUUGUAGAUCUAGAUGCUUUCACGGUGUG-UACCUUGAAACUUACUCUAGUUACUGAACAUAAAUAUGAUGG----CA
..(((.((((((.(((((.((((........)))).)))...(((((.(((...-.))).)))))..................)).))))))...))----). ( -19.10)
>DroSec_CAF1 8466 98 + 1
CUGCCUGUAUUUAUGUCUGGAUCACUUUGUAGAUCUAGAUGCUUUCACGGUGGG-UACCUUAAAACUUACCCUAGUUACUGUACCUAAAUAUGAUUG----CA
..............(((((((((........)))))))))((..(((...((((-(((.....((((......))))...)))))))....)))..)----). ( -26.40)
>DroSim_CAF1 8567 98 + 1
CUGCCUGUAUUUAUGUCUGGAUCACUUUGUAGAUCUAGAUGCUUUCACGGUGCG-UACCUUAAAACUUACCCUAGUUACUGUACCUAAAUAUGAUUG----CA
..((.((((((((.(((((((((........)))))))))........((((((-((.((.............)).))).)))))))))))))...)----). ( -22.72)
>DroEre_CAF1 13419 98 + 1
CUGCCUGUAUUUGUGUCUGGAUCACUUUGUAGAUCUAGAUGCUUUUACGGUGGG-UAUCUUAAAACUCUCUGUAGUCACUCUACAUAAAUCUUAUUU----CA
(..((.(((...(((((((((((........)))))))))))...)))))..).-...............(((((.....)))))............----.. ( -26.60)
>DroWil_CAF1 6326 91 + 1
AUGCCUUUAUUUAUGCUUAGAUCACUAUACAGACAUGGAUCGCUUUGCAGUGAGCUACCAU--AA-----UUUAUUAAUUUACCAUGAGUGU-----UAAUCU
.......((((((((....((((.(...........)))))((((......))))......--..-----.............)))))))).-----...... ( -11.30)
>DroYak_CAF1 11107 98 + 1
CUGUCUGUAUUUGUGUCUGGAUCACUUUGUAGAUCUGGAUGCUUUUACGGUGGG-UACCUUAAAACAUACUGUAGUAUCUCUACAUAAAUCUAAUUU----UA
(((.(((((...(((((..((((........))))..)))))...)))))))).-...............(((((.....)))))............----.. ( -23.30)
>consensus
CUGCCUGUAUUUAUGUCUGGAUCACUUUGUAGAUCUAGAUGCUUUCACGGUGGG_UACCUUAAAACUUACUCUAGUUACUGUACAUAAAUAUGAUUG____CA
......(((((((((((((((((........)))))))).........((((...))))........................)))))))))........... (-11.07 = -11.77 +   0.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:41 2006