| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,078,936 – 5,079,054 |
| Length | 118 |
| Max. P | 0.666707 |
| Location | 5,078,936 – 5,079,054 |
|---|---|
| Length | 118 |
| Sequences | 4 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 72.27 |
| Mean single sequence MFE | -26.43 |
| Consensus MFE | -15.46 |
| Energy contribution | -16.14 |
| Covariance contribution | 0.69 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.666707 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5078936 118 - 27905053 CAACAAUAAUUUUAAGAAAUUUUGAUUCGCUUAGAGUUGUAGAGAACUGAAUCUUGAAUCU-CUGAUGGUUGUAGUGUUCGCAAGAGCAGUUUAGAAAAGACUGGUGGUCUCAGAUUUA .....(((((((((((..(.......)..))))))))))).((((......))))((((((-..(((.(..(...(((((....)))))((((.....)))))..).)))..)))))). ( -24.20) >DroSec_CAF1 5547 103 - 1 CAACUUUAAUUUUAAGGAAUUUUGAUUCACUUUGAGUUUUAGAGAACUGAAUUU----------------UGUAGUGCUCGCAAGAGCAGUAUAGAAAAGACUGGUGGUCUCAGAUUUA ...((..(((((.(((((((....)))).))).)))))..))....((((.(((----------------((((.(((((....))))).)))))))..(((.....)))))))..... ( -30.20) >DroSim_CAF1 5671 103 - 1 CAACUUUAAUUUUAAGGAAUUUUGAUUCACUUUGAGUUGUAGAGAACUGAAUCU----------------UGUAGUGCUCGCAAGCGCAGUAUAGAAAAGACUGGUGGUCUCAGAUUUA ...((.((((((.(((((((....)))).))).)))))).))....((((.(((----------------.(((.(((.(....).))).))))))...(((.....)))))))..... ( -24.00) >DroEre_CAF1 6948 118 - 1 -AGCUUAUAUUUUUAAUUAUUUUCUUUUGAUAAGAGUGGCGAACAACGGAAACAUUAAUAUACUUGAAGUUGUAUUGUUCGCGAGCGCAGCUUAAGAAAGACUGACGGUCUCAGCUUUU -((((..((((((((.(((........)))))))))))((((((((.(....).......(((........)))))))))))((.((((((((....))).))).)).))..))))... ( -27.30) >consensus CAACUUUAAUUUUAAGGAAUUUUGAUUCACUUAGAGUUGUAGAGAACUGAAUCU________________UGUAGUGCUCGCAAGAGCAGUAUAGAAAAGACUGGUGGUCUCAGAUUUA .......(((((((((.............))))))))).........((((((.................((((.(((((....))))).))))....((((.....))))..)))))) (-15.46 = -16.14 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:40 2006