Locus 1757

Sequence ID 3R_DroMel_CAF1
Location 5,067,175 – 5,067,295
Length 120
Max. P 0.559954
window2885

overview

Window 5

Location 5,067,175 – 5,067,295
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 81.56
Mean single sequence MFE -45.08
Consensus MFE -30.64
Energy contribution -30.67
Covariance contribution 0.03
Combinations/Pair 1.30
Mean z-score -1.43
Structure conservation index 0.68
SVM decision value 0.05
SVM RNA-class probability 0.559954
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5067175 120 - 27905053
CUUGGCUGGCCACCGGUACCAGCGGCGGUAAGCACAUCUGCUGGGAUCUACGCUUCCGUCUGCCCAUUGCGGAAAUCAAGCAUCCGGCGGAUUCGUGGAUACGCAAGGUGGCCUGCCAUC
..((((.(((((((....(((((((..((....))..))))))).(((((((..((((((.((.....))(((.........)))))))))..)))))))......))))))).)))).. ( -57.40)
>DroVir_CAF1 613 120 - 1
CUUGGCUGGCAACGGGCACCAGUGGUGGCAAGCAUAUCUGCUGGGACUUGCGUUUCCGACUGCCUAUAACCGAGAUUAAGCAUCCGGCGGACUCGUGGAUAAGAAAAGUGGCCUGCCAUC
..((((.(((.((.(.((((...)))).)...(((.(((((((((...(((...((((............)).))....))))))))))))...)))..........)).))).)))).. ( -36.80)
>DroGri_CAF1 604 120 - 1
CGUGGCUGGCAACGGGCACCAGUGGGGGCAAGCACAUUUGCUGGGAUCUGCGAUUUCGGCUGCCCAUAACAGAGAUUAAGCAUCCGGCGGACUCGUGGAUAAGGAAAGUCGCCUGCCAUC
.(((((.(((.(((((((...(((........)))....((((..(((...)))..)))))))))................(((((.((....))))))).......)).))).))))). ( -41.20)
>DroWil_CAF1 602 120 - 1
CGUGGUUGGCCACUGGCACCAGCGGCGGCAAGCACAUAUGCUGGGAUUUGCGUUUCCGGCUGCCAAUUGCUGAGAUUAAGCAUCCGGCCGAUUCCUGGAUUCGCAAAGUGGCAUGCCAUC
.(((((..((((((....((((((((.....)).....))))))...(((((..((((((.(((...((((.......))))...))).)....)))))..)))))))))))..))))). ( -48.10)
>DroMoj_CAF1 613 120 - 1
CCUGGCUGGCAACGGGCACCAGUGGUGGCAAACAUAUCUGCUGGGACCUGCGUUUCCGACUACCCAUAACUGAGAUAAAGCAUCCAGCUGAUUCUUGGAUUAGAAAAGUUGCCUGCCAUC
..((((.(((((((((..((((..(((.....))...)..))))..)))....................(..(((...(((.....)))...)))..).........)))))).)))).. ( -41.00)
>DroAna_CAF1 600 120 - 1
CGUGGCUAGCCACGGGAACAAGCGGAGGAAAGCACAUUUGCUGGGAUCUGCGCUUUCGGCUACCCAUUGCCGAGAUCAAACAUCCAGCAGACUCCUGGAUUCGCAAGGUGGCAUGUCACC
.(((((..(((((........(((((....((((....))))....)))))(((((((((........)))))))......((((((.......))))))..))...)))))..))))). ( -46.00)
>consensus
CGUGGCUGGCAACGGGCACCAGCGGCGGCAAGCACAUCUGCUGGGAUCUGCGUUUCCGGCUGCCCAUAACCGAGAUUAAGCAUCCGGCGGACUCGUGGAUAAGCAAAGUGGCCUGCCAUC
..((((.((((((((((((((((((..(....)....)))))))......((....))..)))))................(((((.........))))).......)))))).)))).. (-30.64 = -30.67 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:32 2006