Locus 1756

Sequence ID 3R_DroMel_CAF1
Location 5,062,570 – 5,062,679
Length 109
Max. P 0.750812
window2884

overview

Window 4

Location 5,062,570 – 5,062,679
Length 109
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 96.81
Mean single sequence MFE -16.74
Consensus MFE -16.70
Energy contribution -16.70
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.14
Structure conservation index 1.00
SVM decision value 0.47
SVM RNA-class probability 0.750812
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5062570 109 - 27905053
GACGUUGAAGAAAUUCCUGGCCGAUUUCUUCUUCAUCAUCCUGUGUAAAUAAUUGUAAUUUAAAUAAUCUAAAUUUCGUAUUUAACGAAAGCACACA----CACCAUCAAAUC
((.(..(((((((((.......)))))))))..).))....(((((.....(((((.......))))).....((((((.....)))))))))))..----............ ( -16.70)
>DroSec_CAF1 168818 113 - 1
GACGUUGAAGAAAUUCCUGGCCGAUUUCUUCUUCAUCAUCCUGUGUAAAUAAUUGUAAUUUAAAUAAUCUAAAUUUCGUAUGUAACGAAAGCACACACAUACACCAUCAAAUC
((.(..(((((((((.......)))))))))..).)).....(((((.......(.((((((.......)))))).)((.(((..(....).))).)).)))))......... ( -16.80)
>DroSim_CAF1 174648 113 - 1
GACGUUGAAGAAAUUCCUGGCCGAUUUCUUCUUCAUCAUCCUGUGUAAAUAAUUGUAAUUUAAAUAAUCUAAAUUUCGUAUGUAACGAAAGCACACACAUACACCAUCAAAUC
((.(..(((((((((.......)))))))))..).)).....(((((.......(.((((((.......)))))).)((.(((..(....).))).)).)))))......... ( -16.80)
>DroEre_CAF1 171618 113 - 1
GACGUUGAAGAAAUUCCUGGUCGAUUUCUUCUUCAUCAUCCUGUGUAAAUAAUUGUAAUUUAAAUAAUCUAAAUUUCGUAUUUAACGAAAGCACACACACACACCAUCAAAUC
((.(..(((((((((.......)))))))))..).))....(((((.....(((((.......))))).....((((((.....))))))))))).................. ( -16.70)
>DroYak_CAF1 175764 111 - 1
GACGUUGAAGAAAUUCCUGGCCGAUUUCUUCUUCAUCAUCCUGUGUAAAUAAUUGUAAUUUAAAUAAUCUAAAUUUCGUAUUUAACGAAAGCACAC--ACACACCAUCAAAUC
((.(..(((((((((.......)))))))))..).))....(((((.....(((((.......))))).....((((((.....))))))))))).--............... ( -16.70)
>consensus
GACGUUGAAGAAAUUCCUGGCCGAUUUCUUCUUCAUCAUCCUGUGUAAAUAAUUGUAAUUUAAAUAAUCUAAAUUUCGUAUUUAACGAAAGCACACACACACACCAUCAAAUC
((.(..(((((((((.......)))))))))..).))....(((((.....(((((.......))))).....((((((.....))))))))))).................. (-16.70 = -16.70 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:31 2006