| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,058,451 – 5,058,549 |
| Length | 98 |
| Max. P | 0.641055 |
| Location | 5,058,451 – 5,058,549 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 74.34 |
| Mean single sequence MFE | -40.82 |
| Consensus MFE | -21.07 |
| Energy contribution | -21.66 |
| Covariance contribution | 0.59 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.52 |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.641055 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5058451 98 + 27905053 -------CCAAUCCGCUG------CCCAUGCCAAUGGUUCCAAUGGCGCCGGGCCCACCAUUACUGCCA---UUUC------CCGGUGGACCGCCAGGAGCGGCAUUGGCCGGAUUCAUC -------..((((((..(------((.(((((....(((((..(((((..((.....))....(..((.---....------..))..)..))))))))))))))).))))))))).... ( -38.90) >DroGri_CAF1 207619 114 + 1 C------CCAGACCGCUGCCAGCGCCCAUGCCAAUGGUGCCAAUGGCACCGGGGCCGCCAUUGCUGCCACCGUUGCCGUUACCGGGCGGUGCUCCAGGUGCGGCAUUUGCUGGAUUCAUU .------((((.....((((.(((((...(((...((((...((((((.((((((.((....)).))).))).)))))))))).)))((....)).)))))))))....))))....... ( -51.70) >DroSec_CAF1 164721 99 + 1 C------CCAAUCCGCUG------CCCAUGCCAAUGGUUCCAAUGGCGCCGGGCCCACCAUUGGUGCCA---UUUC------CCGGUGGACCGCCAGGAGCUGCGUUGGCCGGAUUCAUC .------..((((((..(------((.((((....(((((((((((((((((........)))))))))---))..------..((((...)))).)))))))))).))))))))).... ( -41.70) >DroWil_CAF1 188892 99 + 1 C------CCAGACCGCUG------CCCAUGCCAAUCGUACCGAUUGCUCCAGGACCACCGCCAUUACUC---CCUC------CGGGUGGACCACCUGGAGCCGCAUUUGCUGGAUUCAUG .------((((.....((------(.......(((((...)))))((((((((....(((((.......---....------..)))))....)))))))).)))....))))....... ( -32.32) >DroMoj_CAF1 205612 108 + 1 CCACCGCCUAGGCCACUG------CCCAUGCCAAUGGUACCAAUGGCACCGGGUCCGCCAUUGCUGCCACCGUUGC------CCGGUGGUGCGCCAGGUGCAGCAUUCGCUGGAUUCAUA ....(((((.(((....(------(((.(((((.((....)).)))))..))))........((.(((((((....------.)))))))))))))))))((((....))))........ ( -45.40) >DroAna_CAF1 160001 99 + 1 C------CCAGUCCACUG------CCCAUGCCGAUGGUGCCAAUGGCUCCAGGGCCACCAUUACUGCCA---UUGC------CGGGCGGGCCACCAGGAGCGGCGUUAACCGGAUUCAUU .------..(((((.(((------(((..((.((((((.....(((((....)))))........))))---))))------.))))))(((.(.....).))).......))))).... ( -34.92) >consensus C______CCAGUCCGCUG______CCCAUGCCAAUGGUACCAAUGGCACCGGGCCCACCAUUACUGCCA___UUGC______CCGGUGGACCGCCAGGAGCGGCAUUGGCCGGAUUCAUC .........................((((....))))..((....(((((.((((((((.........................)))))...))).)))))(((....)))))....... (-21.07 = -21.66 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:27 2006