Locus 1748

Sequence ID 3R_DroMel_CAF1
Location 5,048,344 – 5,048,445
Length 101
Max. P 0.939441
window2873

overview

Window 3

Location 5,048,344 – 5,048,445
Length 101
Sequences 5
Columns 101
Reading direction forward
Mean pairwise identity 97.82
Mean single sequence MFE -22.48
Consensus MFE -22.08
Energy contribution -22.12
Covariance contribution 0.04
Combinations/Pair 1.04
Mean z-score -1.44
Structure conservation index 0.98
SVM decision value 1.30
SVM RNA-class probability 0.939441
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5048344 101 + 27905053
GCAAAAGAAAUAAACAGUGCAGUGCAACGCUAAAUGUUUUUACUUCGCCGUGUGUAUUUGGCAAAAUGCAAUGCAGUAAAUUCUAGAAGAUUAAUUGGAUU
...............(.((((.((((..((((((((....(((......)))..))))))))....)))).)))).)....(((((........))))).. ( -17.20)
>DroSec_CAF1 154605 101 + 1
GCAGAAGAAAUAAAGAGUGCAGUGCAAUGCUAAAUGCUUUUACUUCGCCGUGUGUAUUUGGCAAAAUGCAAUGCAGUAAAUUCUAGAAGAUUAAUUGGAUU
.....((((......(.((((.((((.((((((((((...(((......))).))))))))))...)))).)))).)...))))................. ( -23.70)
>DroSim_CAF1 160401 101 + 1
GCAGAAGAAAUAAAGAGUGCAGUGCAAUGCUAAAUGCUUUUACUUCGCCGUGUGUAUUUGGCAAAAUGCAAUGCAGUAAAUUCUAGAAGAUUAAUUGGAUU
.....((((......(.((((.((((.((((((((((...(((......))).))))))))))...)))).)))).)...))))................. ( -23.70)
>DroEre_CAF1 156980 101 + 1
GCAGAAGAAAUAAAGAGUGCAGUGCAAUGCUAAAUGCUUUUACUUCGGCGUGUGUAUUUGGCAAAAUGCAAUGCAGUAAAUUCUAGAAGAUUAAUUGGAUU
.....((((......(.((((.((((.((((((((((.....(....).....))))))))))...)))).)))).)...))))................. ( -23.90)
>DroYak_CAF1 161124 101 + 1
GCAGAAGAAAUAAAGAGUGCAGUGCAAUGCUAAAUGCUUUUACUUCGGCGUGUGUAUUUGGCAAAAUGCAAUGCAGUAAAUUCUAGAAGAUUAAUUGGAUU
.....((((......(.((((.((((.((((((((((.....(....).....))))))))))...)))).)))).)...))))................. ( -23.90)
>consensus
GCAGAAGAAAUAAAGAGUGCAGUGCAAUGCUAAAUGCUUUUACUUCGCCGUGUGUAUUUGGCAAAAUGCAAUGCAGUAAAUUCUAGAAGAUUAAUUGGAUU
.....((((......(.((((.((((.((((((((((...(((......))).))))))))))...)))).)))).)...))))................. (-22.08 = -22.12 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:20 2006