Locus 1746

Sequence ID 3R_DroMel_CAF1
Location 5,045,291 – 5,045,388
Length 97
Max. P 0.584034
window2869

overview

Window 9

Location 5,045,291 – 5,045,388
Length 97
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 95.04
Mean single sequence MFE -20.16
Consensus MFE -16.28
Energy contribution -16.12
Covariance contribution -0.16
Combinations/Pair 1.13
Mean z-score -1.52
Structure conservation index 0.81
SVM decision value 0.10
SVM RNA-class probability 0.584034
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5045291 97 - 27905053
AUUUUCGUUGGCUUUAUUUACAAAUUUUUGGCUUGGAUACGCCAAAUAUUUGUUAAGAGAUU-UCGGUGUUUGGUAAUCUCUAAAACCAUCGCCGUUC
.........(((.......((((((.((((((........)))))).))))))..(((((((-.(.(....).).))))))).........))).... ( -24.10)
>DroSec_CAF1 151533 96 - 1
AUUUUCGUUGGCUUUAUUUACA-AUUUUUGGCUUGGAUACGCUAAAUAUUUGUUAAGAGAUU-UCUGUGUUUGGUAAUCUCUAAAACCAUCGCCGUUC
.........(((.......(((-(..((((((........))))))...))))..(((((((-.((......)).))))))).........))).... ( -19.90)
>DroSim_CAF1 157358 96 - 1
AUUUUCGUUGGCUUUAUUUACA-AUUUUUGGCUUGGAUACGCUAAAUAUUUGUUAAGAGAUU-UCGGUGUUUGGUAAUCUCUAAAACCAUCGCCGUUC
.........(((.......(((-(..((((((........))))))...))))..(((((((-.(.(....).).))))))).........))).... ( -19.00)
>DroEre_CAF1 153818 96 - 1
AUUUUCGUUGGUUUUAUUUACA-AUUUUUGGUUUAGAUACGCUAAAUAUUUGUUAAGAGAUU-UCGGUGUUUGGUAAUCUCUAAAACCAUCGCCGUUU
.....((.(((((((....(((-(..((((((........))))))...))))..(((((((-.(.(....).).)))))))))))))).))...... ( -19.50)
>DroYak_CAF1 157900 97 - 1
AUUUUCGUUGGCUUUAUUUACC-AUUUUUGGUUUGGAUACGCUAAAUAUUUGUUAAGAGAUUUUCGGUGUUUGGUAAUCUCCACAACCAUCGCCGUUU
.......(((((..((((((((-(....))))..))))).)))))...................(((((..((((..........)))).)))))... ( -18.30)
>consensus
AUUUUCGUUGGCUUUAUUUACA_AUUUUUGGCUUGGAUACGCUAAAUAUUUGUUAAGAGAUU_UCGGUGUUUGGUAAUCUCUAAAACCAUCGCCGUUC
.........(((.......(((.((.((((((........)))))).)).)))..(((((((.((.......)).))))))).........))).... (-16.28 = -16.12 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:16 2006