| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,043,111 – 5,043,224 |
| Length | 113 |
| Max. P | 0.524849 |
| Location | 5,043,111 – 5,043,224 |
|---|---|
| Length | 113 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 85.15 |
| Mean single sequence MFE | -19.98 |
| Consensus MFE | -13.44 |
| Energy contribution | -13.50 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.67 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.524849 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5043111 113 + 27905053 GCCAAUUAUUAGCAUAUGCUCGCAAGUAAUAUAUUACUAAAUAAUACGAAACUAAGGCAAUUAUUUCCUUAACUGACAUCAAUAUGUAAUUGCUAAGAGCUCUUAAUUAAGUA------- ...(((((..(((((((...(....)..)))).......................(((((((((.....................)))))))))....)))..))))).....------- ( -15.70) >DroSim_CAF1 155170 120 + 1 GCCAAUUAUUAGCAUAUGCUCGCAAGUAAUAUAUUACUAAAUAAUACGAAACUAAGGCAAUUAUUUCCUUAACUGACAUCAAUGUGUAAUUGCUAAAAGCUCUUAAUUAAGUUUCAGCUG ((..(((((((((....)))....(((((....))))).))))))..((((((..(((((((((.....................)))))))))..((....)).....)))))).)).. ( -16.50) >DroEre_CAF1 151533 107 + 1 GCCAAUUAUUAGCAUAUGCUCGCAAGUAAUAUAUUACUAAAUAUUAGGAAACUAAAGCAAUUA-------------CAUCAAUGUGUAAUUGCUAAAAGUUCUUAAUUAAGUUUCAGCUG .........((((((((...(....)..))))...(((....((((((((.....((((((((-------------(((....))))))))))).....))))))))..)))....)))) ( -24.70) >DroYak_CAF1 155531 107 + 1 GCCAAUUAUUAGCAUAUGCUCGCCAGUAAGAUAUUACUAAAUAAUAGGAAAUUAAAGCAAUUA-------------CAUCAAUGUGUAAUUGCUAAAAGCUCUUAAUUAAGUUUCAGCUG .((.(((((((((....)))....(((((....))))).)))))).)).......((((((((-------------(((....)))))))))))...(((((((....)))....)))). ( -23.00) >consensus GCCAAUUAUUAGCAUAUGCUCGCAAGUAAUAUAUUACUAAAUAAUACGAAACUAAAGCAAUUA_____________CAUCAAUGUGUAAUUGCUAAAAGCUCUUAAUUAAGUUUCAGCUG ...(((((..(((...........(((((....))))).................(((((((((.....................)))))))))....)))..)))))............ (-13.44 = -13.50 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:15 2006