| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,028,177 – 5,028,273 |
| Length | 96 |
| Max. P | 0.536203 |
| Location | 5,028,177 – 5,028,273 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 78.08 |
| Mean single sequence MFE | -14.57 |
| Consensus MFE | -9.09 |
| Energy contribution | -9.12 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.536203 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5028177 96 + 27905053 UCGAUAG-----CUUCUUUCGCAUAAAGAUGCUGCGUUUGCAUUUCAUAAAUGAAACAUGUGCAUAAUAUUAAAUAAAAUGAACGUGUAAGUAAACAACAA ..(.(((-----(.(((((.....))))).)))))((((((..((((....))))((((((.(((.............))).))))))..))))))..... ( -19.82) >DroVir_CAF1 178529 87 + 1 -GGACGC-----AAGUUGCUGCAUAAUGUUGCAACUUUUGCAUUUCAUAAAUGAAACAUGUGCAUAAUAUUAAU--------ACAUACAAGUAAACAACAA -(.((((-----(((((((.((.....)).))))))..))).(((((....)))))...)).)..........(--------((......)))........ ( -15.50) >DroPse_CAF1 190376 90 + 1 ------C-----CAUCUUUUGCAUAAAAUUGCAACUUUUGCAUUUCAUAAAUGAAACAUGUGCAUAAUAUUAAAUAAAAAUAGCAUGUAAGUAAACAACGA ------.-----......(((((......)))))..(((((.(((((....)))))....(((((..((((.......))))..))))).)))))...... ( -12.10) >DroMoj_CAF1 164165 87 + 1 -CGAUGC-----AAUUUGCUGCAUAAUGUUGCAACUUUUGCAUUUCAUAAAUGAAACAUGUGCAUAAUAUUAAU--------GCAUUCAAGUAAACAACCA -.(((((-----((.((((.((.....)).))))...))))))).......(((.....((((((.......))--------)))))))............ ( -16.20) >DroAna_CAF1 133659 101 + 1 GUACUGCCUCCGUAUUUUUCGCAUAAAAUUGCAACUUUUGCAUUUCAUAAAUGAAACAUGUGCAUAAUAUUAAAUAAAAUGAACCUGUAAGUAAACAACAC .((((((.....((((((..(((......)))......(((((((((....))))....)))))...........)))))).....)).))))........ ( -11.70) >DroPer_CAF1 201595 90 + 1 ------C-----CAUCUUUUGCAUAAAGUUGCAACUUUUGCAUUUCAUAAAUGAAACAUGUGCAUAAUAUUAAAUAAAAAUAGCAUGUAAGUAAACAACGA ------.-----......(((((......)))))..(((((.(((((....)))))....(((((..((((.......))))..))))).)))))...... ( -12.10) >consensus __GAUGC_____CAUCUUUUGCAUAAAGUUGCAACUUUUGCAUUUCAUAAAUGAAACAUGUGCAUAAUAUUAAAUAAAA__AACAUGUAAGUAAACAACAA ....................(((((....(((((...)))))(((((....)))))..)))))...................................... ( -9.09 = -9.12 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:13 2006