Locus 1741

Sequence ID 3R_DroMel_CAF1
Location 5,025,780 – 5,025,882
Length 102
Max. P 0.956602
window2864

overview

Window 4

Location 5,025,780 – 5,025,882
Length 102
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 76.93
Mean single sequence MFE -25.13
Consensus MFE -11.15
Energy contribution -11.77
Covariance contribution 0.62
Combinations/Pair 1.30
Mean z-score -2.66
Structure conservation index 0.44
SVM decision value 1.47
SVM RNA-class probability 0.956602
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5025780 102 + 27905053
-----CGAGCAAUUACGGUGAAUUGCACAAUUGUGAAGCCAAUUGGAAAAUUUACCAA-AAC-ACAGUUAAUUUGUGGCAAAAGUCAGAAACCGACAGCA--CACAAUCGA
-----(((((......((((((((...((((((......))))))...))))))))..-..(-((((.....)))))))....(((.......)))....--.....))). ( -25.60)
>DroSim_CAF1 136798 102 + 1
-----CGAGCAAUUACGGUGAAUUGCACAAUUGUGUAGCCAAUUGGAAAAUUUACCAA-AAC-ACAGUUAAUUUGUGGCAAAAGUCAGAAACCGACAGCA--CACAAUCGA
-----(((((......((((((((...((((((......))))))...))))))))..-..(-((((.....)))))))....(((.......)))....--.....))). ( -25.60)
>DroEre_CAF1 134013 100 + 1
-----CGAGCAAUUACGGUGAAUUGCACAAUUGUGUAGCCAAUUGGAAAAUUUACCAA-AAC-ACAGUUAAUUUGUGGCAA--GUCAGAAACCGACAUAC--CACAAUCGA
-----(((........((((((((...((((((......))))))...))))))))..-...-.........((((((...--(((.......)))...)--)))))))). ( -25.90)
>DroYak_CAF1 137915 100 + 1
-----CGAGCAAUUUCGGUGAAUUGCACAAUUGUGUAGCCAAUUGGAAAAUUUACCAA-AAC-GCAGUUAAUUUGCGGCAA--GUCAGAAACCGACAGCC--CACAAUCGA
-----(((((......((((((((...((((((......))))))...))))))))..-..(-((((.....)))))))..--(((.......)))....--.....))). ( -27.10)
>DroMoj_CAF1 161598 110 + 1
CUGAAAUGGCAUUUGCACCUAAUUGCAUAAUUGCCAAGUCAACUGGAAAAUUUGCUAA-AAUGCCAGUUAAUUUGUGGUGUAUGCGAGACAGCUACAGAUAAAUUAAUAGA
..((..(((((..((((......))))....)))))..))((((((...((((....)-))).)))))).(((((((((((.......))).))))))))........... ( -29.80)
>DroAna_CAF1 131418 93 + 1
-----GUUGCACAUUCUCUUAAUUGCACAAUUGUGCAAUCGAAUGGAAAAUUUACCAAAAAU-ACAGUUAAUUUGCGGGAA--GUCAAA-ACC---------AACAAUCGA
-----.(((.((.((((((..(((((((....)))))))..).(((........))).....-.............)))))--))))).-...---------......... ( -16.80)
>consensus
_____CGAGCAAUUACGGUGAAUUGCACAAUUGUGUAGCCAAUUGGAAAAUUUACCAA_AAC_ACAGUUAAUUUGUGGCAA__GUCAGAAACCGACAGCA__CACAAUCGA
........((......((((((((...((((((......))))))...)))))))).......((((.....)))).))................................ (-11.15 = -11.77 +   0.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:11 2006