Locus 174

Sequence ID 3R_DroMel_CAF1
Location 836,253 – 836,366
Length 113
Max. P 0.843867
window288

overview

Window 8

Location 836,253 – 836,366
Length 113
Sequences 4
Columns 113
Reading direction forward
Mean pairwise identity 96.46
Mean single sequence MFE -37.26
Consensus MFE -33.88
Energy contribution -34.88
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -1.99
Structure conservation index 0.91
SVM decision value 0.76
SVM RNA-class probability 0.843867
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 836253 113 + 27905053
AUACAUAUAUAUAAAUACAUUCGCUUGCCGCAGUUUGCCUCGAGAUUAGCGGAAGCGAGAACAGUCAGUGGGCAAUGUGGAGCAAGGCUUCUCUGCGGCGAUGACGAUGUGAC
...............(((((.((((((((((((.((((((...((((.((....))......))))...))))))...(((((...))))).))))))))).).))))))).. ( -37.70)
>DroSec_CAF1 11695 113 + 1
AUACAUAUAUAUAAAUACAUUCGCUUGCCGCAGUUUGCCUCGAGAUUAGCGGAAGCGAGAACAGUCAGUGGGCAAUGUGGAGCAAGGCUUCUCUGCGGCGAUGACGAUGUGAC
...............(((((.((((((((((((.((((((...((((.((....))......))))...))))))...(((((...))))).))))))))).).))))))).. ( -37.70)
>DroSim_CAF1 10609 113 + 1
AUACAUAUAUAUAAAUACAUUCGCUUGCCGCAGUUUGCCUCGAGAUUAGCGGAAGCGAGAACAGUCAGUGGGCAAUGUGGAGCAAGGCUUCUCUGCGGCGAUGACGAUGUGAC
...............(((((.((((((((((((.((((((...((((.((....))......))))...))))))...(((((...))))).))))))))).).))))))).. ( -37.70)
>DroEre_CAF1 13333 109 + 1
GCAUAUAUAUAUAAAUACAUUCGCUUGCCGCAGUUUGGCUCGAGAUUAGCGGAAGCGAGAA----CAGUGGGCAAUGUGGAGCAAGGCUUCUCUGCGGCGAUGACGAUGUGAC
...............(((((.((((((((((((....(((((......((....)).....----...))))).....(((((...))))).))))))))).).))))))).. ( -35.94)
>consensus
AUACAUAUAUAUAAAUACAUUCGCUUGCCGCAGUUUGCCUCGAGAUUAGCGGAAGCGAGAACAGUCAGUGGGCAAUGUGGAGCAAGGCUUCUCUGCGGCGAUGACGAUGUGAC
...............(((((.((((((((((((.((((((...((((.((....))......))))...))))))...(((((...))))).))))))))).).))))))).. (-33.88 = -34.88 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:49 2006