| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,010,750 – 5,010,866 |
| Length | 116 |
| Max. P | 0.679641 |
| Location | 5,010,750 – 5,010,866 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 73.35 |
| Mean single sequence MFE | -19.95 |
| Consensus MFE | -1.94 |
| Energy contribution | -2.14 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.10 |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.679641 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5010750 116 + 27905053 ACACUGAGAAAAACGUGUUUAAAAGAUCUUUCAUAUCGAU--AGCACAAACAAUUGUGUUUCGGGAAACUGUUACAGAUUUUUAAGAAAUACAGUUAAAUUAAACUUUCCGUUCU--AAC ......((((....((((((.((((((((.......(((.--(((((((....))))))))))(....)......))))))))...))))))((((......)))).....))))--... ( -21.50) >DroSec_CAF1 117377 118 + 1 ACACUGAGAAAAACGCGUUUAAAUGGUCUUUAAUCUCAAA--AGCACAAACUAUUGGAUUUCAGGAAACUGUAACAUAUUUCGAUGAAAUACAGUUAAAUUAAACGUUCAUUACUGAAAU .((.(((((.....((((((((....((((.((((.(((.--((......)).)))))))..))))(((((((.(((......)))...)))))))...)))))))))).))).)).... ( -18.80) >DroSim_CAF1 121314 118 + 1 ACACUGAGAAAAACGCAUUUAAAUGAUCUUUAAUCUCAAA--AGCACAAACUAUUGAGUUUCAGGAAACUGUUACAGAUUUUAAAGAAAUUCAGUUAAAUUAAACUUUCAUCACUGAAAU .((.(((((((.....((((((.((((((((((..((...--....(((....))).((..(((....)))..)).))..)))))))...))).)))))).....)))).))).)).... ( -22.70) >DroEre_CAF1 119012 112 + 1 ACACUGAGAAAAACGCACUUAAAUUGUAUUUAAUCUCCAC--AAAACAAACAUAAGGGUUUGAUGAAACUGUGAUAGAUUUUUAAGAAAUGCAA----UUUAAACUUUCAUUUCU--AAC ......(((((.......((((((((((((((((((.(((--(...(((((......))))).......))))..)))))......))))))))----))))).......)))))--... ( -18.54) >DroYak_CAF1 120158 118 + 1 ACACUGCGAGGAAUAGGUUGGAGUUAUCUUAAAUCCCGAACAAAAACCAACCUUUUGGUUUCAUAAAACUAUUUUAGCUUUUCAAGAUAUACAAUUAAUUUAGACCUUCAUUUCU--UAC .......((((((((((((.((((((.................(((((((....)))))))........((((((........))))))......)))))).)))))..))))))--).. ( -18.20) >consensus ACACUGAGAAAAACGCGUUUAAAUGAUCUUUAAUCUCAAA__AGCACAAACAAUUGGGUUUCAGGAAACUGUUACAGAUUUUUAAGAAAUACAGUUAAAUUAAACUUUCAUUUCU__AAC .....................................................(((.(((((..(((((((...))).))))...))))).))).......................... ( -1.94 = -2.14 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:09 2006