Locus 1736

Sequence ID 3R_DroMel_CAF1
Location 4,993,656 – 4,993,749
Length 93
Max. P 0.563238
window2855

overview

Window 5

Location 4,993,656 – 4,993,749
Length 93
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 82.70
Mean single sequence MFE -20.00
Consensus MFE -13.20
Energy contribution -13.20
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.79
Structure conservation index 0.66
SVM decision value 0.06
SVM RNA-class probability 0.563238
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4993656 93 + 27905053
---------GCAAAACUGCGCAACGUGGAAAAAUUCAUCAAGCGCAAAAUAACAUUGCAUACUUUAUGGCGCAUUAUGAAAACACACGCGCU--AGACUUGAGU
---------((((...(((((...(((((....)))))...)))))........))))..((((..((((((...............)))))--).....)))) ( -20.06)
>DroVir_CAF1 130638 101 + 1
CAAAAACAAUCUAAACUGUACAACGUGGAAAAAUUCAUCAAGCGCAAAAUAACAUUGCAUACUUUAUGGCGCAUUAUGAAAACACACGCGCC--AAG-UGUGUA
................((..(...(((((....)))))...)..)).........((((((((...((((((...............)))))--)))-)))))) ( -19.66)
>DroPse_CAF1 143338 95 + 1
---------GCAAAACUGCGCAACGUGGAAAAAUUCAUCAAGCGCAAAAUAACAUUGCAUACUUUAUGGCGCAUUAUGAAAACACACGCGCUCAGGACUUGCAC
---------((((..(((.((..((((......(((((...((((...((((...........)))).))))...)))))....)))).)).)))...)))).. ( -23.80)
>DroGri_CAF1 123196 102 + 1
CAAGAGCAAUCUAAACUGUGCAACGUGGAAAAAUUCAUCAAGCGCAAAAUAACAUUGCAUACUUUAUGGCGCAUUAUGAAAACACACGCGUU--AACAUCCAAA
..(((....)))....(((..((((((......(((((...((((...((((...........)))).))))...)))))......))))))--.)))...... ( -20.20)
>DroMoj_CAF1 118428 98 + 1
CAACGACCAUCUAAACUGUACAACGUGGAAAAAUUCAUCAAGCGCAAAAUAACAUUGCAUACUUUAUGGCGCAUUAUGAAAACACACGCCCC--GAG-CCG---
.......................((((......(((((...((((...((((...........)))).))))...)))))....))))....--...-...--- ( -13.20)
>DroPer_CAF1 149736 95 + 1
---------GCAAAACUGCGCAACGUGGAAAAAUUCAUCAAGCGCAAAAUAACAUUGCAUACUUUAUGGCGCAUUAUGAAAACACACGCGCUCGGGACUUGCAC
---------((((..(((.((..((((......(((((...((((...((((...........)))).))))...)))))....)))).)).)))...)))).. ( -23.10)
>consensus
_________GCAAAACUGCGCAACGUGGAAAAAUUCAUCAAGCGCAAAAUAACAUUGCAUACUUUAUGGCGCAUUAUGAAAACACACGCGCU__AAACUUGAAA
.......................((((......(((((...((((...((((...........)))).))))...)))))....))))................ (-13.20 = -13.20 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:03 2006