Locus 1735

Sequence ID 3R_DroMel_CAF1
Location 4,993,407 – 4,993,504
Length 97
Max. P 0.508589
window2854

overview

Window 4

Location 4,993,407 – 4,993,504
Length 97
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 82.53
Mean single sequence MFE -18.57
Consensus MFE -12.38
Energy contribution -12.58
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.61
Structure conservation index 0.67
SVM decision value -0.05
SVM RNA-class probability 0.508589
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4993407 97 + 27905053
ACUCCCUUGCUGUUAAUUUAAGUUCAAAUUCAGU------UUGCAUUAGGAAUUAUGAUUUUGAAUGCAUUUCCACCUUUU--UGGUUGCUCUUUUGAUCGGCUU
........((((((((.....(((((((.(((..------((.(....).))...))).)))))))(((...(((......--))).)))....)))).)))).. ( -18.60)
>DroSec_CAF1 100012 79 + 1
ACUCACUGGCUG------------------CACU------UUGCAUUAGGAAUUAUGAUUUUAAAUGCACUACCACCUUUU--UGGUUGCUCUUUUGAUCGGCUU
..((.((((.((------------------(...------..)))))))))....(((((..((..(((..((((......--)))))))..))..))))).... ( -14.90)
>DroSim_CAF1 103926 96 + 1
ACUCACUGGCUGUUAAUUUAAGCUCA-AUUCAGU------UUGCAUUAGGAAUUAUGAUUUUGAAUGCAUUUCCACCUUUU--UGGUUGCUCUUUUGAUCGGCUU
.......(((((((((....(((...-.......------.((((((..((((....))))..)))))).....(((....--.))).)))...)))).))))). ( -18.30)
>DroEre_CAF1 101065 104 + 1
CCCCUCUUGCUGUUAAUUUAAUCUCA-AUUCACAUGGCAAUUGCAUUAGGAAUUAUGCUUUUGAAUGCAUUUCCACCUUUAUGUGGUUGCUCUUUUGAUCGGCUU
........((((..............-..(((...((((((..(((.(((....((((........)))).....)))..)))..))))))....))).)))).. ( -22.93)
>DroYak_CAF1 102360 96 + 1
ACUCUCUAGCUGUUAAUUUAAGCUCA-AUUCACA------UUGCAUUAGGAAUUAUAAUUUUGAAUGCAUUUUCACCUUUU--UGGUUGCUCUUUUGAUCGGCUU
.......(((((((((....(((...-.......------.((((((..((((....))))..)))))).....(((....--.))).)))...)))).))))). ( -18.10)
>consensus
ACUCACUGGCUGUUAAUUUAAGCUCA_AUUCACU______UUGCAUUAGGAAUUAUGAUUUUGAAUGCAUUUCCACCUUUU__UGGUUGCUCUUUUGAUCGGCUU
........((((.............................((((((..((((....))))..)))))).....(((.......)))............)))).. (-12.38 = -12.58 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:02 2006