| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 4,978,602 – 4,978,696 |
| Length | 94 |
| Max. P | 0.723532 |
| Location | 4,978,602 – 4,978,696 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 80.01 |
| Mean single sequence MFE | -26.72 |
| Consensus MFE | -13.10 |
| Energy contribution | -14.36 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.41 |
| Structure conservation index | 0.49 |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.723532 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4978602 94 + 27905053 ACUAUAUAAUGAC---UUGCAAUCGAUUGCAGUGUGUUUUCAGUU--CAAAUGCCUGGAU------AUUGCGAUUGCGUUAAGUUCAUUACCGAACUCUCGGUAA .......((((((---(((((((((..(.(((.((((((......--.))))))))).).------....)))))))...))).)))))(((((....))))).. ( -24.20) >DroPse_CAF1 124720 102 + 1 ACUAUAUAAUGAGUGGCUGCCAUCGAUUGCAGUUCGG-GUCAGUUCUCGAAUGGCUGGCUGGACCUUCUGCGAUUGAGUUAAGUUCAUUACGGGG--CACGGCAA ............((.(.((((.((((((((((.((.(-(((((((.......)))))))).))....)))))))))).....((.....))..))--))).)).. ( -33.60) >DroSim_CAF1 87187 94 + 1 ACUAUAUAAUGAC---UUGCAAUCGAUUGCAGUGUGUUUUCAGUU--CAAAUGGCUGGAU------AUUGCGAUUGCGUUAAGUUCAUUACCGAAGUCUCGGGAA ......(((((((---(((....((((((((((((....((((((--.....))))))))------))))))))))...)))).))))))((((....))))... ( -26.80) >DroEre_CAF1 86113 90 + 1 ACUACAUAAUGAC---UUGCCAUCGAUUGCAGUGUGU--UCAGUU--CAAAUGGCUGGAU------AUUGCGAUUGCGUUAAGUUCAUUACCGAACUCUCGG--A ......(((((((---(((.(..((((((((..((((--((((((--.....))))))))------)))))))))).).)))).))))))((((....))))--. ( -28.20) >DroYak_CAF1 87197 92 + 1 ACUAUAUAAUGAC---UUGCUAUCGAUUGCAGUGUGU--UCAGUU--CAAAUGGCUGUAU------AUUGCGAUUGCGUUAAGUUCAUUACUGAACUCUCAAUAA ......(((((((---(((....(((((((((((((.--.(((((--.....))))))))------))))))))))...)))).))))))............... ( -22.80) >DroAna_CAF1 80975 83 + 1 ACU--AUAAUGAC---CUGCAAUCGAUGGCAGUG---------UU--CAAAUGGCUGGAU------AUUGCGAUUGAGUUAAGUUCAUUACAAAACUGUUAGAAA ...--.((((((.---((....(((((.((((((---------((--((......)))))------))))).)))))....)).))))))............... ( -24.70) >consensus ACUAUAUAAUGAC___UUGCAAUCGAUUGCAGUGUGU__UCAGUU__CAAAUGGCUGGAU______AUUGCGAUUGCGUUAAGUUCAUUACCGAACUCUCGGUAA ......((((((......((...((((((((((......((((((.......))))))........)))))))))).)).....))))))(((......)))... (-13.10 = -14.36 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:56 2006