Locus 1731

Sequence ID 3R_DroMel_CAF1
Location 4,978,114 – 4,978,209
Length 95
Max. P 0.722194
window2847

overview

Window 7

Location 4,978,114 – 4,978,209
Length 95
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 70.94
Mean single sequence MFE -18.11
Consensus MFE -2.98
Energy contribution -3.26
Covariance contribution 0.28
Combinations/Pair 1.14
Mean z-score -1.77
Structure conservation index 0.16
SVM decision value 0.40
SVM RNA-class probability 0.722194
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4978114 95 + 27905053
ACUUAUU--------------UCUUGAAGUG---CAGU--------UCGCCAAUUUGCAAAAGCUCAUUGUGUUUCAAAAAUGAUACGUUUUCUCUGCUCAACUUUCGAGAGAUAAUAUC
..(((((--------------((((((((((---(((.--------....((((..((....))..)))).((.(((....))).)).......))))...)).)))))))))))).... ( -21.10)
>DroSec_CAF1 84872 103 + 1
ACUUAUU--------------UCUUGAAGUG---CAGUACAUAUACUCGCCAAUUUGCACAAGCUCAUUCUGUUUCAAAACUGAUAAGUUUUCUCUGCUCAACUUUCGAGAAAUAAUAUC
..(((((--------------((((((((((---(((.................))))))...........((...((((((....))))))....))......)))))))))))).... ( -21.13)
>DroSim_CAF1 86705 80 + 1
ACUUAUU--------------UCUUCAAGUG---C-----------------------AAAAGCUCAUUCUGUUUCAAAACUGAUAAGUUUUCUCUGCUCAACUUUCGAGAGAUAAUAUC
..(((((--------------((((.(((((---(-----------------------(((((((...((.(((....))).))..))))))...)))...))))..))))))))).... ( -14.40)
>DroEre_CAF1 85612 116 + 1
UUUCAUUGUAUAAUUUCAUUUUUUUUAAGUGUCGCAGU----GUAUUCACCAAUUUGCUAAAGCUCAUUGUGUUUCAAAAAUGAUAACUUUCCUCUGCUCAACUUUCAAGAGAUAAUAUC
.................(((((((..((((...((((.----(.......((((..((....))..)))).((((((....))).)))....).))))...))))..)))))))...... ( -16.10)
>DroYak_CAF1 86691 113 + 1
UUUCAUUGUUUAAUUC--UUUUUUUUAGAUGUUACAGU----GUAUCCUCGAAUUUGCUAAAACUCAUUGAGUUUCAA-AAUGAUAACAUUUCUCUGCUCAACUUUCCAGAGAUGAUAUC
...((((((.....((--(.......)))....)))))----)(((((((((.(((....))).)).((((((....(-((((....)))))....)))))).......)))..)))).. ( -17.80)
>consensus
ACUUAUU______________UCUUGAAGUG___CAGU_____UA_UCGCCAAUUUGCAAAAGCUCAUUGUGUUUCAAAAAUGAUAAGUUUUCUCUGCUCAACUUUCGAGAGAUAAUAUC
............................................................((((.......)))).......((((...((((((............))))))...)))) ( -2.98 =  -3.26 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:55 2006