Locus 173

Sequence ID 3R_DroMel_CAF1
Location 836,067 – 836,158
Length 91
Max. P 0.983310
window287

overview

Window 7

Location 836,067 – 836,158
Length 91
Sequences 3
Columns 91
Reading direction reverse
Mean pairwise identity 78.46
Mean single sequence MFE -17.04
Consensus MFE -14.05
Energy contribution -13.62
Covariance contribution -0.44
Combinations/Pair 1.22
Mean z-score -2.02
Structure conservation index 0.82
SVM decision value 1.94
SVM RNA-class probability 0.983310
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 836067 91 - 27905053
AAAUGCUAAUUCACUUCGCUGAGAUUUCCAAUGAUAAAAUCCAGAUUUCCAAAGCUGUAAUUCUUUAGUACGCAUUUUGGAAAUUCAAGCA
...((((...........(((.(((((.........))))))))((((((((((.(((.............)))))))))))))...)))) ( -16.22)
>DroSec_CAF1 11524 78 - 1
AAAUGCUAUCUCACUUCGCUGAGAUAUCCAAUGAUCAU-------------UGGCUGUAUUCCUUUAGUACACCCUUUGGAUAUCCAAGCA
.................(((..(((((((((.......-------------.((.((((((.....)))))).)).)))))))))..))). ( -20.70)
>DroSim_CAF1 10438 78 - 1
AAAUGCUAUCUCACUUCGCUGAGAUAUCCAAUGAUCAA-------------UGGUUGUAAUCCUUUAGUACGCCCUUUGGAAAUCCAAGCA
...((((((((((......)))))).(((((.......-------------.((.((((.........)))).)).)))))......)))) ( -14.20)
>consensus
AAAUGCUAUCUCACUUCGCUGAGAUAUCCAAUGAUCAA_____________UGGCUGUAAUCCUUUAGUACGCCCUUUGGAAAUCCAAGCA
.................(((..(((((((((.....................((.((((.........)))).)).)))))))))..))). (-14.05 = -13.62 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:48 2006