Locus 1724

Sequence ID 3R_DroMel_CAF1
Location 4,946,535 – 4,946,626
Length 91
Max. P 0.711335
window2835

overview

Window 5

Location 4,946,535 – 4,946,626
Length 91
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 82.72
Mean single sequence MFE -22.64
Consensus MFE -12.83
Energy contribution -13.33
Covariance contribution 0.50
Combinations/Pair 1.12
Mean z-score -2.83
Structure conservation index 0.57
SVM decision value 0.38
SVM RNA-class probability 0.711335
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4946535 91 + 27905053
GUUCUUUCC-CCCAAAGUCAAUAGCAGCAAAUUCAAUUUUCCCCGGCAAACCAAAGUCUGGGGAAAGUUUCCUCC-------UUUUGCAUCAUACGC---UG
.........-................(((((...(((((((((((((........).))))))))))))......-------.))))).........---.. ( -20.00)
>DroSec_CAF1 53942 88 + 1
GUUCUUUCC-CCCAAAGUCAAUAGCAGGAAAUUCAAUUUUCCCCGACAAACUAAAGUCUGGGGAAAGUUUCCUCC-------UAUUCCGCUAUACG------
.........-.....(((.(((((.(((((((.....((((((((((........))).)))))))))))))).)-------))))..))).....------ ( -24.60)
>DroSim_CAF1 54276 88 + 1
GUUCUUUCC-CCCAAAGUCAAUAGCAGGAAAUUCAAUUUUCCCCGACCAACUAAAGUCUGGGGAAAGUUUCCUCC-------UAUCCCGCUAUACG------
.........-..........(((((.(((.....(((((((((((((........))).))))))))))......-------..))).)))))...------ ( -23.62)
>DroEre_CAF1 54087 99 + 1
GUUCUUUCCCCCCAAAGUCAAUAGCAGGAAAUUCAAUUUUCCCCGGCAAACUAAAGUCUGGGGAAAGUUAGCUUCUUCCUUCUGUUCCACUACAUGC---UG
...............(((.(((((.(((((....(((((((((((((........).))))))))))))......))))).)))))..)))......---.. ( -24.90)
>DroYak_CAF1 54906 95 + 1
GUUCUUUCC-CCCAAAGUCAAUAGCAGGAAAUUCAAUUUUCCCCGGCAAACUAAAGUCUGGGGAAAGUUGGCUCCUUC------UCCCACUACAUACUCUUG
.........-.....(((....((.((((...(((((((((((((((........).)))))))))))))).)))).)------)...)))........... ( -25.00)
>DroAna_CAF1 49010 88 + 1
G--CUUUCC-CCCAAAGUCAAUAGCAGGAAAUUCAAUUUUCCCAGGCAAACUAAAGUCUGC-AAAAGUUUCUUCC-------UUUGCCACUUUAUGC---UG
(--((((..-...)))))...((((((((((......)))))..((((((...(((...((-....))..)))..-------))))))......)))---)) ( -17.70)
>consensus
GUUCUUUCC_CCCAAAGUCAAUAGCAGGAAAUUCAAUUUUCCCCGGCAAACUAAAGUCUGGGGAAAGUUUCCUCC_______UAUUCCACUAUACGC___UG
..........................(((.....(((((((((((((........))).))))))))))...)))........................... (-12.83 = -13.33 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:44 2006