Locus 1719

Sequence ID 3R_DroMel_CAF1
Location 4,939,155 – 4,939,253
Length 98
Max. P 0.988133
window2830

overview

Window 0

Location 4,939,155 – 4,939,253
Length 98
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 78.71
Mean single sequence MFE -23.06
Consensus MFE -21.26
Energy contribution -21.50
Covariance contribution 0.24
Combinations/Pair 1.05
Mean z-score -2.23
Structure conservation index 0.92
SVM decision value 2.11
SVM RNA-class probability 0.988133
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4939155 98 - 27905053
GGCCAACAGAGAAUUCUCGUUGGCCAACAGCUGCUCGUCGCUGCGACAGUUUCGCACCCCAUCCCACCGCACCGCACCAACCCUCAC----UCCCUCCCUCA
(((((((.(((....))))))))))....((.((.....))(((((.....)))))............)).................----........... ( -24.10)
>DroSec_CAF1 46664 97 - 1
GGCCAACAGCGAAUUCUCGUUGGCCAACAGCUGCUCGUCGCUGCGACAGUUUCGCACCCCACUCCAA-----GCCACCAACCCCCACUUCCUCCCUCCCUCG
(((...((((((....))))))((....(((((.((((....)))))))))..))............-----)))........................... ( -20.30)
>DroSim_CAF1 46783 97 - 1
GGCCAACAGAGAAUUCUUGUUGGCCAACAGCUGCUCAUCGCUGCGACAGUUUCGCACCCCACUCCAC-----GCCACCAACCCCCACUUCCUCCCUCCCUCG
((((((((.((....))))))))))....((.((.....))(((((.....)))))...........-----))............................ ( -21.40)
>DroEre_CAF1 46867 75 - 1
GGCCAACAGAGAAUUCUCGUUGGCCAACAGCUGCUCGUCGCUGCGACAGUUUGGCACCCCCA-----------------------AU----UCCCUCCCUCA
(((((((.(((....))))))))))....((((.((((....))))))))((((.....)))-----------------------).----........... ( -24.90)
>DroYak_CAF1 47635 78 - 1
GGCCAACAGAGAAUUCUCGUUGGCCAACAGCUGCUCGUCGCUGCGACAGUUUGGCACCCCCAUCC--------------------AU----UCCCUCCCCCA
(((((((.(((....))))))))))...(((((.((((....)))))))))(((.....)))...--------------------..----........... ( -24.60)
>consensus
GGCCAACAGAGAAUUCUCGUUGGCCAACAGCUGCUCGUCGCUGCGACAGUUUCGCACCCCAAUCCA________CACCAACCC_CAC____UCCCUCCCUCA
(((((((.(((....))))))))))...(((((.((((....)))))))))................................................... (-21.26 = -21.50 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:39 2006