| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 827,328 – 827,437 |
| Length | 109 |
| Max. P | 0.963286 |
| Location | 827,328 – 827,437 |
|---|---|
| Length | 109 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 83.02 |
| Mean single sequence MFE | -26.43 |
| Consensus MFE | -21.43 |
| Energy contribution | -21.18 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.81 |
| SVM decision value | 1.55 |
| SVM RNA-class probability | 0.963286 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 827328 109 - 27905053 AUGGCAUUCCGCUAUUUCUGCGGGCUACUGUCUAUAUAGUUUUCCAUAU--------AUUUGGGAAGUUAUCAGCCGUUACACAACCUUCCCAAAUGCCCAGCUUUAUGCG---UCUCAA ...((((...(((........(((..(((((....)))))..)))...(--------((((((((((...................)))))))))))...)))...)))).---...... ( -26.11) >DroSec_CAF1 9649 109 - 1 AUGGCAUUCCGCUAUUUCUGCGGGCUACUGUCUGCAUAGUUUUCCAUAU--------AUUUGGGAAGUUAUCAGCCGUUACAUAACCUUCCCAAAUGCCCAACUUUAUGCG---UCUCCA ..(((..(((((.......))))).........((((((.........(--------((((((((((((((..........)))).))))))))))).......)))))))---)).... ( -28.29) >DroEre_CAF1 11273 120 - 1 AUGGCAUUCAACUCUUUCUGCGGGCUACUGUCUGUAUAAUUUUCCAUAUAUGCAUGUAUUUGGGAAGUUAUCAACCGUUACACAACCUUCCUGAAUGCCUAACUGCAUGCGCUUUCUCAA ..((((((((........(((((((....)))))))((((((((((.((((....)))).)))))))))).....................)))))))).....((....))........ ( -31.50) >DroYak_CAF1 9897 116 - 1 AUGGCAUACAACUCUUUCUGCGGGCUACUGUCUGUAUAAUUUUUCAUAUAU----AUAUUAAGGAAGUUAUCAGCUUUUACACAACCUUCCUGAAUGCCUAACUUCAGGCUUUUUCUCAA ..(((((.(.........(((((((....)))))))...............----......((((((...................))))))).)))))..................... ( -19.81) >consensus AUGGCAUUCAACUAUUUCUGCGGGCUACUGUCUGUAUAAUUUUCCAUAU________AUUUGGGAAGUUAUCAGCCGUUACACAACCUUCCCAAAUGCCCAACUUCAUGCG___UCUCAA ..(((.............(((((((....))))))).....................((((((((((...................)))))))))))))..................... (-21.43 = -21.18 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:45 2006