| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 4,909,095 – 4,909,190 |
| Length | 95 |
| Max. P | 0.725009 |
| Location | 4,909,095 – 4,909,190 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 78.45 |
| Mean single sequence MFE | -25.71 |
| Consensus MFE | -18.82 |
| Energy contribution | -18.93 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.725009 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4909095 95 - 27905053 GAGCAU----UUCCCCUGUGUAUGACAUCAGCUAUAAUUUCCAUUACGAGUCGAGC-----GCUGAAAAUUGUACACCAGGGAGCUUAUUAAGCACGCUUC--------CCC-- ((((..----...(((((((((..(..(((((......(((......)))......-----)))))...)..)))).))))).(((.....)))..)))).--------...-- ( -26.70) >DroVir_CAF1 20622 101 - 1 GUGGAAUUGUUUCCCCUGUGUAUGACAUCAGCUAUAAUUUCCAUUACGAGUCGAGCGACUCGCUCAAAAUUGUACACCUGGGAGCUUAUUAAGUCGGGACC------------- ........((..((((.(((((..(....(((..((((....)))).(((((....)))))))).....)..)))))..))).(((.....))).)..)).------------- ( -22.90) >DroGri_CAF1 20940 105 - 1 GCGGAG----UUCCCCAGUGUAUGACAUCAGCUAUAAUUUCCAUUACGAGUCGAGC-----GCUGAAAAUCGUACACCUGGGAGCUUAUUAAGUCAAGACCCGCUCGCUCGCAA ((((((----(((((..((((((((..(((((......(((......)))......-----)))))...))))))))..)))))))......((....)))))).......... ( -34.00) >DroWil_CAF1 17982 94 - 1 GAGGAG----UUCCCCAGUGUAUGACAUCAGCUAUAAUUUCCAUUACGAGUCGAGC-----GCUGAAAAUUGUACUCAAGGGAGCUUAUUAAGCAUGAAAA--------CC--- ...(((----(((((((((((.((((.((..................)))))).))-----))))....(((....)))))))))))..............--------..--- ( -23.37) >DroYak_CAF1 16846 91 - 1 GGGCAG----CUCCCCUGUGUAUGACAUCAGCUAUAAUUUCCAUUACGAGUCGAGC-----GCUGAAAAUUGCACACCAGGGAGCUUAUUAAGCACGCUU-------------- ..((((----(((((.((((((.....(((((......(((......)))......-----)))))....))))))...)))))))......))......-------------- ( -25.50) >DroMoj_CAF1 19959 100 - 1 ----------UUCCCCUGUGUAUGACAUCAGCUAUAAUUUCCAUUACGAGUCGAGCGACCUGCUGAAAAUUGUACACCUGGGAGCUUAUUAAGUCAAGACCCGC----UCGCAA ----------(((((..(((((..(..(((((.......((......))(((....)))..)))))...)..)))))..)))))....................----...... ( -21.80) >consensus GAGGAG____UUCCCCUGUGUAUGACAUCAGCUAUAAUUUCCAUUACGAGUCGAGC_____GCUGAAAAUUGUACACCAGGGAGCUUAUUAAGCAAGGACC________C____ ...........((((..((((((((..(((((......(((.((.....)).)))......)))))...))))))))..))))(((.....))).................... (-18.82 = -18.93 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:28 2006