Locus 1703

Sequence ID 3R_DroMel_CAF1
Location 4,894,349 – 4,894,450
Length 101
Max. P 0.553264
window2804

overview

Window 4

Location 4,894,349 – 4,894,450
Length 101
Sequences 4
Columns 101
Reading direction forward
Mean pairwise identity 96.04
Mean single sequence MFE -32.30
Consensus MFE -29.10
Energy contribution -29.73
Covariance contribution 0.62
Combinations/Pair 1.06
Mean z-score -1.55
Structure conservation index 0.90
SVM decision value 0.04
SVM RNA-class probability 0.553264
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4894349 101 + 27905053
AUUCGCUGGCUUACACUAACUACUACAGCUAAGCAGCUCGCUGUGUCCUUUGUGUCUGUGUGGGUGUGUAGAUGUGUUGGUGUUCGUGUCGGUGUGAGUGU
...(((((((..((((((((((((((((((..((((..(((..........))).))))...))).))))).)).))))))))....)))))))....... ( -32.60)
>DroSec_CAF1 2349 101 + 1
AUUCGCUGGCUUACACUAACUACUACAGCUAAGCAGCUCGCUGUGUCCUUUGUGUCUGUGUGGGUGUGUAGAUGUGUUGGUGUUCGUGUCGGUGUGAGUGU
...(((((((..((((((((((((((((((..((((..(((..........))).))))...))).))))).)).))))))))....)))))))....... ( -32.60)
>DroSim_CAF1 2292 101 + 1
AUUCGCUGGCUUACACUAACUACUACAGCUAAGCAGCUCGCUGUGUCCUUUGUGUCUGUGUGGUUGUGUAGAUGUGUUGGUGUUCGUGUCGGUGUGAGUGU
...(((((((..(((((((((((.(((((((.((((..(((..........))).)))).)))))))))).....))))))))....)))))))....... ( -33.40)
>DroYak_CAF1 2408 101 + 1
AUUCGCUGGCUUACACUAACUACUACAGCUAAGCAGCUCGCUGUGUCCUUUGUGUCUGUGUGAGUGUGUAGAUGUGUACGUGUUCGUGUGAGUGUGGGCGU
...((((.((((((((.(((.((((((.(((.(((.(((((...(.(......).)...)))))))).)))...)))).))))).))))))))...)))). ( -30.60)
>consensus
AUUCGCUGGCUUACACUAACUACUACAGCUAAGCAGCUCGCUGUGUCCUUUGUGUCUGUGUGGGUGUGUAGAUGUGUUGGUGUUCGUGUCGGUGUGAGUGU
...(((((((..((((((((((((((((((..((((..(((..........))).))))...))).))))).)).))))))))....)))))))....... (-29.10 = -29.73 +   0.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:15 2006