| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 4,885,479 – 4,885,578 |
| Length | 99 |
| Max. P | 0.629110 |
| Location | 4,885,479 – 4,885,578 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 74.90 |
| Mean single sequence MFE | -32.05 |
| Consensus MFE | -23.02 |
| Energy contribution | -23.25 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.35 |
| Mean z-score | -0.91 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.629110 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4885479 99 - 27905053 CAGCGGCUGCCACCAACGCCGUGGCCAAAUGCAUUUUCUUGGGUGGGCGAUACUUAAGCGUAUCGGUGGGCAGGGCAAAGGUGGCCUCUGUAAAAUAAG--------- ..((((..((((((...(((.((.(((....(((((....)))))..((((((......)))))).))).)).)))...))))))..))))........--------- ( -38.90) >DroPse_CAF1 4353 100 - 1 UCGCUGCCGCUGCCACUGCAUUUGCCAGAUGCAUUUUCUUGGGCGGGCGGUACUUUAGUGUAUCCGUGGGCAGGACAAAGGUGGCCUCUGCUAA----A----AACAG ((.(((((.(((((..((((((.....))))))........)))))(((((((......))).)))).)))))))......((((....)))).----.----..... ( -31.00) >DroEre_CAF1 1846 104 - 1 CAGCGGCUGCCACCAACGCGGUGGCCAAAUGCAUCUUCUUGGGUGGGCGAUACUUGAGCGUAUCAAUGGGCAGGACAAAGGUGGCCUCUGUAAAAUAAG----AAUAG (((.(((..(((((.....))).(((.....(((((....)))))...(((((......)))))....)))........))..))).))).........----..... ( -32.70) >DroWil_CAF1 6434 96 - 1 CAGCAGCUGCCAC---AGCAUUGGCCAAAUGCAUCUUUUUUGGUGGUCGAUAUUUAAGAGUGUCCGUUGGCAGCACAAAAGUGGCUUCUGGAAAACAAA--------- ...(((..(((((---.(((((.....))))).....(((((((.(((((((((....))))))....))).)).))))))))))..))).........--------- ( -27.20) >DroYak_CAF1 1843 104 - 1 CAGCGGCUGCCACCAACGCGGUGGCCAAAUGCAUCUUCUUGGGUGGACGAUACUUAAGCGUAUCAGUGGGCAGGGCAAAGGUGGCCUCUGUAAUAUAAG----CAUAG ..((((..((((((...((..((.(((....(((((....)))))...(((((......)))))..))).))..))...))))))..))))........----..... ( -34.20) >DroMoj_CAF1 1922 93 - 1 CAGCAGCUGCC---ACAGCAUUUGCCAAAUGCAUCUUCUUGGGUGGUCGAUACUUCAGCGUGUCCGUGGGCAGCACAAAGGUAGCUUCUGC--------GAAUG---- (((.(((((((---.......(((((.....(((((....)))))...(((((......)))))....)))))......))))))).))).--------.....---- ( -28.32) >consensus CAGCGGCUGCCACCAACGCAGUGGCCAAAUGCAUCUUCUUGGGUGGGCGAUACUUAAGCGUAUCCGUGGGCAGGACAAAGGUGGCCUCUGUAAAAUAAG_________ ..((((..((((((.........(((.....(((((....)))))...(((((......)))))....)))........))))))..))))................. (-23.02 = -23.25 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:14 2006